SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001166292
Gene Symbol: PTCH2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.44819933A>G COSN5741512 HX27T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6769b-3p tgGAGAGGaagttgt CCCUCUCU m6b Created HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-7111-3p tgGAGAGGAagttgt AUCCUCUC m7b (m6b->m7b) HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-6881-3p tggAGAGGAagttgt AUCCUCUU m6b Created HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-6873-3p tgGAGAGAAagttgt UUCUCUCU m7a (m7a->m6a) HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-6845-3p tGGAGAGGaagttgt CCUCUCCU m7a Created HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-6833-3p tgGAGAGAAAgttgt UUUCUCUC m8a Disrupted HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-6809-3p tggAGAGAAagttgt CUUCUCUU m6b Disrupted HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-6780a-3p tggAGAGGAagttgt CUCCUCUG m6b Created HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-4768-5p tgGAGAGAAagttgt AUUCUCUC m7b (m7b->m6b) HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719
hsa-miR-3183 tgGAGAGGaagttgt GCCUCUCU m6b Created HHHSH_2952_PTCH2|NM_001166292|exon_utr3|-1.40683937772327|0.0691551407555719

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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