SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001164145
Gene Symbol: CHAMP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.114325551C>T COSM4382397 526T [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3653-3p ctaTTCTTAGaatca CUAAGAAG m7a Created HPSLB_2159_G2604.1_115091024
hsa-miR-4251 ctaTTCTCAGaatca CCUGAGAA m7b Disrupted HPSLB_2159_G2604.1_115091024
hsa-miR-4263 ctattCTTAGAATca AUUCUAAG m8a Created HPSLB_2159_G2604.1_115091024
hsa-miR-4329 ctatTCTCAGaatca CCUGAGAC m6b Disrupted HPSLB_2159_G2604.1_115091024
hsa-miR-580-3p ctATTCTCAgaatca UUGAGAAU m7b (m7b->m6b) HPSLB_2159_G2604.1_115091024
hsa-miR-6507-5p cTATTCTTagaatca GAAGAAUA m7b Created HPSLB_2159_G2604.1_115091024
hsa-miR-6761-5p ctatTCTCAGAatca UCUGAGAG m7a Disrupted HPSLB_2159_G2604.1_115091024

Mutation Mutation ID Sample Name Cancer Type
chr13:g.114325544C>T COSM945704 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2278 atCTGCTCTattctc GAGAGCAG m7b (m7b->m6b) HPSLB_2159_G2604.1_115091024
hsa-miR-4422 atcTGCTTTattctc AAAAGCAU m6b Created HPSLB_2159_G2604.1_115091024
hsa-miR-4468 aTCTGCTCTattctc AGAGCAGA m8a (m8a->m7a) HPSLB_2159_G2604.1_115091024
hsa-miR-6835-3p atcTGCTTTattctc AAAAGCAC m6b Created HPSLB_2159_G2604.1_115091024

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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