SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001164145
Gene Symbol: CHAMP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.114324073A>T COSM945702 TCGA-D1-A177-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30b-5p ctaaTGTTTACtatc UGUAAACA m7b Created HPRO8_4399_G5731.1_115089567
hsa-miR-543 ctAATGTTTactatc AAACAUUC m7a (m6a->m7a) HPRO8_4399_G5731.1_115089567
hsa-miR-30e-5p ctaaTGTTTACtatc UGUAAACA m7b Created HPRO8_4399_G5731.1_115089567
hsa-miR-30d-5p ctaaTGTTTACtatc UGUAAACA m7b Created HPRO8_4399_G5731.1_115089567
hsa-miR-30c-5p ctaaTGTTTACtatc UGUAAACA m7b Created HPRO8_4399_G5731.1_115089567
hsa-miR-30a-5p ctaaTGTTTACtatc UGUAAACA m7b Created HPRO8_4399_G5731.1_115089567

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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