SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001160302
Gene Symbol: SYNJ1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.32631563C>T COSM3550287 TCGA-D3-A3MR-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1343-3p agtcaatCCCAGGAa CUCCUGGG m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-3690 agtcaatTCCAGGaa ACCUGGAC m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-4254 agtcaatTCCAGGaa GCCUGGAG m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-5089-5p agtcAATCCCAggaa GUGGGAUU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6128 agtcaATTCCAGgaa ACUGGAAU m7b Created HPSLB_4809_G5860.1_34003866
hsa-miR-619-5p agtcaATCCCAGgaa GCUGGGAU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6506-5p agtcaATCCCAGgaa ACUGGGAU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6742-3p agtcaatCCCAGGaa ACCUGGGU m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6783-3p agtcaatCCCAGGAa UUCCUGGG m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6852-5p agtcaatCCCAGGaa CCCUGGGG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-875-3p agtcaaTTCCAGGaa CCUGGAAA m7a Created HPSLB_4809_G5860.1_34003866
hsa-miR-939-3p agtcaatCCCAGGaa CCCUGGGC m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-1343-3p agtcaatCCCAGGAa CUCCUGGG m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-3690 agtcaatTCCAGGaa ACCUGGAC m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-4254 agtcaatTCCAGGaa GCCUGGAG m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-5089-5p agtcAATCCCAggaa GUGGGAUU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6128 agtcaATTCCAGgaa ACUGGAAU m7b Created HPSLB_4809_G5860.1_34003866
hsa-miR-619-5p agtcaATCCCAGgaa GCUGGGAU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6506-5p agtcaATCCCAGgaa ACUGGGAU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6742-3p agtcaatCCCAGGaa ACCUGGGU m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6783-3p agtcaatCCCAGGAa UUCCUGGG m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-6852-5p agtcaatCCCAGGaa CCCUGGGG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-875-3p agtcaaTTCCAGGaa CCUGGAAA m7a Created HPSLB_4809_G5860.1_34003866
hsa-miR-939-3p agtcaatCCCAGGaa CCCUGGGC m6b Disrupted HPSLB_4809_G5860.1_34003866

Mutation Mutation ID Sample Name Cancer Type
chr21:g.32631549C>T COSM1030207 TCGA-BS-A0TA-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-3p aaatATGTGAagttc AUCACAUU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-23b-3p aaatATGTGAagttc AUCACAUU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-23c aaatATGTGAagttc AUCACAUU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-5580-3p aaATATGTGaagttc CACAUAUG m7a (m6a->m7a) HPSLB_4809_G5860.1_34003866
hsa-miR-23a-3p aaatATGTGAagttc AUCACAUU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-23b-3p aaatATGTGAagttc AUCACAUU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-23c aaatATGTGAagttc AUCACAUU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-5580-3p aaATATGTGaagttc CACAUAUG m7a (m6a->m7a) HPSLB_4809_G5860.1_34003866

Mutation Mutation ID Sample Name Cancer Type
chr21:g.32631548G>A COSM1413787 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-3p aaTATGCAAagttct UUGCAUAG m7a (m6a->m7a) HPSLB_4809_G5860.1_34003866
hsa-miR-3680-3p aatATGCAAAgttct UUUUGCAU m7b Created HPSLB_4809_G5860.1_34003866
hsa-miR-448 aATATGCAAagttct UUGCAUAU m8a (m7a->m8a) HPSLB_4809_G5860.1_34003866
hsa-miR-153-3p aaTATGCAAagttct UUGCAUAG m7a (m6a->m7a) HPSLB_4809_G5860.1_34003866
hsa-miR-3680-3p aatATGCAAAgttct UUUUGCAU m7b Created HPSLB_4809_G5860.1_34003866
hsa-miR-448 aATATGCAAagttct UUGCAUAU m8a (m7a->m8a) HPSLB_4809_G5860.1_34003866

Mutation Mutation ID Sample Name Cancer Type
chr21:g.32631538CCA>TTA COSM4566624 CSCC-17-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1270 aagtTCTCCAaacccat CUGGAGAU m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-146a-5p aAGTTCTCcaaacccat UGAGAACU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-146b-5p aAGTTCTCcaaacccat UGAGAACU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-186-5p aagTTCTTTaaacccat CAAAGAAU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-3133 aaGTTCTTTAaacccat UAAAGAAC m8a Created HPSLB_4809_G5860.1_34003866
hsa-miR-4434 aagTTCTCCaaacccat AGGAGAAG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-4511 aAGTTCTTtaaacccat GAAGAACU m7b Created HPSLB_4809_G5860.1_34003866
hsa-miR-4516 aagTTCTCCaaacccat GGGAGAAG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-4531 aagTTCTCCAaacccat AUGGAGAA m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-5703 aagTTCTCCaaacccat AGGAGAAG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-620 aagtTCTCCAaacccat AUGGAGAU m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-7153-5p aAGTTCTCcaaacccat UGAGAACU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-1270 aagtTCTCCAaacccat CUGGAGAU m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-146a-5p aAGTTCTCcaaacccat UGAGAACU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-146b-5p aAGTTCTCcaaacccat UGAGAACU m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-186-5p aagTTCTTTaaacccat CAAAGAAU m6b Created HPSLB_4809_G5860.1_34003866
hsa-miR-3133 aaGTTCTTTAaacccat UAAAGAAC m8a Created HPSLB_4809_G5860.1_34003866
hsa-miR-4434 aagTTCTCCaaacccat AGGAGAAG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-4511 aAGTTCTTtaaacccat GAAGAACU m7b Created HPSLB_4809_G5860.1_34003866
hsa-miR-4516 aagTTCTCCaaacccat GGGAGAAG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-4531 aagTTCTCCAaacccat AUGGAGAA m7b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-5703 aagTTCTCCaaacccat AGGAGAAG m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-620 aagtTCTCCAaacccat AUGGAGAU m6b Disrupted HPSLB_4809_G5860.1_34003866
hsa-miR-7153-5p aAGTTCTCcaaacccat UGAGAACU m7b Disrupted HPSLB_4809_G5860.1_34003866

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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