SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001159740
Gene Symbol: LTA
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573390C>T COSM3253291 T3724 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255b-2-3p ccAGTGGTatctact AACCACUU m6b Created HPSLB_6286_G7669.1_31541167
hsa-miR-1273g-3p cCAGTGGTatctact ACCACUGC m7a Created HPSLB_6286_G7669.1_31541167
hsa-miR-181a-2-3p cCAGTGGTatctact ACCACUGA m7a Created HPSLB_6286_G7669.1_31541167
hsa-miR-3935 ccagtggTATCTACt UGUAGAUA m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-4252 cCAGTGGCatctact GGCCACUG m7b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573375G>C COSM1329818 TCGA-36-2543-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-151a-5p ctCTCCTCGtcccca UCGAGGAG m7b (m6b->m7b) HPSLB_6286_G7669.1_31541167
hsa-miR-151b ctCTCCTCGtcccca UCGAGGAG m7b (m6b->m7b) HPSLB_6286_G7669.1_31541167
hsa-miR-3144-5p ctctcctGGTCCCCa AGGGGACC m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-3150b-3p cTCTCCTCgtcccca UGAGGAGA m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-3191-3p ctctcctCGTCCCCa UGGGGACG m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-4768-3p cTCTCCTGGtcccca CCAGGAGA m8a (m8a->m7a) HPSLB_6286_G7669.1_31541167
hsa-miR-4784 cTCTCCTCgtcccca UGAGGAGA m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-665 ctCTCCTGGTcccca ACCAGGAG m8a Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573370C>A COSM1077584 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-5p caatTCTCTCCtggt UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-3123 caATTCTCTcctggt CAGAGAAU m7b (m7b->m6b) HPSLB_6286_G7669.1_31541167
hsa-miR-4306 caatTCTCTCCtggt UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4644 caatTCTCTCCtggt UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4768-3p caattcTCTCCTGGt CCAGGAGA m8a Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-665 caattctCTCCTGGt ACCAGGAG m7b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573368C>T COSM4485488 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-5p aacaatTCTCTCCtg UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-219a-2-3p aACAATTCTctcctg AGAAUUGU m8a (m8a->m7a) HPSLB_6286_G7669.1_31541167
hsa-miR-3123 aacaATTCTCTcctg CAGAGAAU m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4306 aacaatTCTCTCCtg UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4644 aacaatTCTCTCCtg UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573360C>A COSM1329819 TCGA-36-2537-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-513c-5p cCTTGAGAAacaatt UUCUCAAG m8a (m7a->m8a) HPSLB_6286_G7669.1_31541167
hsa-miR-514b-5p cCTTGAGAAacaatt UUCUCAAG m8a (m7a->m8a) HPSLB_6286_G7669.1_31541167
hsa-miR-7158-5p ccTTGAGCaacaatt GGCUCAAU m6b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-744-3p ccttgaGCAACAatt CUGUUGCC m6b Disrupted HPSLB_6286_G7669.1_31541167

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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