SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001151
Gene Symbol: SLC25A4
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.185144856C>T COSM3602461 TCGA-EE-A3AF-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3916 gcTTCCTCTccttct AAGAGGAA m7b (m7b->m6b) HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-4428 gcttccTCTCCTTct CAAGGAGA m7b Disrupted HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-3125 gcTTCCTCTccttct UAGAGGAA m7b (m7b->m6b) HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-1252-5p gcttcctTTCCTTCt AGAAGGAA m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6859-5p gcTTCCTCTCcttct GAGAGGAA m8a Disrupted HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023

Mutation Mutation ID Sample Name Cancer Type
chr4:g.185144852T>C COSM4123717 TCGA-BR-4361-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4510 cagggCTCCCTCtcc UGAGGGAG m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-4419a cagggCTCCCTCtcc UGAGGGAG m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-3916 cagggcTTCCTCTcc AAGAGGAA m7b Disrupted HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-3125 cagggcTTCCTCTcc UAGAGGAA m7b Disrupted HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-1233-3p cAGGGCTCcctctcc UGAGCCCU m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6873-5p cagggcTCCCTCTcc CAGAGGGA m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6859-5p cagggcTTCCTCTCc GAGAGGAA m8a Disrupted HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6827-5p cagGGCTCCCtctcc UGGGAGCC m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-671-5p cagGGCTTCCTctcc AGGAAGCC m8a Disrupted HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6133 cagggCTCCCTCtcc UGAGGGAG m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6130 cagggCTCCCTCtcc UGAGGGAG m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6129 cagggCTCCCTCtcc UGAGGGAG m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023
hsa-miR-6127 cagggCTCCCTCtcc UGAGGGAG m7b Created HHKTB_2222_NM_001151|290|329|39.7808736874384|0.727031008917023

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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