SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145444
Gene Symbol: SCAF4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.31672194G>A COSM185509 TCGA-AA-3845-01 [large_intestine][colon][NS][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-147a tgccaCCACACAtga GUGUGUGG m7b Created HPRO8_9567_G12683.1_33044510
hsa-miR-147b tgccaCCGCACAtga GUGUGCGG m7b Disrupted HPRO8_9567_G12683.1_33044510
hsa-miR-4746-3p tgcCACCGCacatga AGCGGUGC m6b Disrupted HPRO8_9567_G12683.1_33044510
hsa-miR-644a tgccaCCACACatga AGUGUGGC m6b Created HPRO8_9567_G12683.1_33044510
hsa-miR-6786-5p tgCCACCGCacatga GCGGUGGG m7a (m7a->m6a) HPRO8_9567_G12683.1_33044510

Mutation Mutation ID Sample Name Cancer Type
chr21:g.31672187A>G COSM3799850 TCGA-FD-A3SL-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-767-5p gcacATGGTGCAcag UGCACCAU m8a Created HPRO8_9567_G12683.1_33044510
hsa-miR-96-3p gcACATGATgcacag AAUCAUGU m7b (m7b->m6b) HPRO8_9567_G12683.1_33044510

Mutation Mutation ID Sample Name Cancer Type
chr21:g.31671561A>G COSM4653328 SNU-C4 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3689d ccgttgaACCTCCCa GGGAGGUG m7a Disrupted HPRO8_9566_G12682.1_33043877
hsa-miR-2467-5p ccgttGAGCCTCcca UGAGGCUC m7b Created HPRO8_9566_G12682.1_33043877
hsa-miR-95-3p CCGTTGAAcctccca UUCAACGG m8a Disrupted HPRO8_9566_G12682.1_33043877
hsa-miR-6799-5p ccgttgaACCTCCCa GGGGAGGU m7b Disrupted HPRO8_9566_G12682.1_33043877

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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