SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145417
Gene Symbol: MSL2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.136152570A>C COSM204725 TCGA-AA-3977-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-5p tgctaCAAAAAacta CUUUUUGC m6b Disrupted HPRO8_10485_G13964.1_135871405
hsa-miR-19a-5p tgctacaCAAAACTa AGUUUUGC m7a Created HPRO8_10485_G13964.1_135871405
hsa-miR-19b-1-5p tgctacaCAAAACTa AGUUUUGC m7a Created HPRO8_10485_G13964.1_135871405
hsa-miR-19b-2-5p tgctacaCAAAACTa AGUUUUGC m7a Created HPRO8_10485_G13964.1_135871405
hsa-miR-2113 tgctaCACAAAacta AUUUGUGC m6b Created HPRO8_10485_G13964.1_135871405
hsa-miR-3674 tgCTACAAaaaacta AUUGUAGA m6b Disrupted HPRO8_10485_G13964.1_135871405
hsa-miR-5010-3p tgctACACAAAActa UUUUGUGU m8a Created HPRO8_10485_G13964.1_135871405
hsa-miR-599 tgctACACAAaacta GUUGUGUC m6b Created HPRO8_10485_G13964.1_135871405

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136152559G>T COSM1616959 HCC108 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4661-5p actatGCTAGTatat AACUAGCU m6b Created HPRO8_10485_G13964.1_135871405
hsa-miR-6814-3p actATGCGAGTatat ACUCGCAU m8a Disrupted HPRO8_10485_G13964.1_135871405
hsa-miR-6872-5p actATGCGAGtatat UCUCGCAU m7b Disrupted HPRO8_10485_G13964.1_135871405

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136152559G>A COSM1038847 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-3p aCTATGCAAgtatat UUGCAUAG m8a (m7a->m8a) HPRO8_10485_G13964.1_135871405
hsa-miR-6814-3p actATGCGAGTatat ACUCGCAU m8a Disrupted HPRO8_10485_G13964.1_135871405
hsa-miR-6872-5p actATGCGAGtatat UCUCGCAU m7b Disrupted HPRO8_10485_G13964.1_135871405

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151624T>C COSM3380412 PCSI_0052_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3167 aGAAATCCcactcta AGGAUUUC m7b Created HPRO8_10484_G13962.1_135870467
hsa-miR-4481 agaaatCCCACTCta GGAGUGGG m7b Created HPRO8_10484_G13962.1_135870467
hsa-miR-4654 agaaATCCCACtcta UGUGGGAU m7b Created HPRO8_10484_G13962.1_135870467
hsa-miR-4745-5p agaaatCCCACTCta UGAGUGGG m7b Created HPRO8_10484_G13962.1_135870467
hsa-miR-4769-5p agaaATCCCACtcta GGUGGGAU m7b Created HPRO8_10484_G13962.1_135870467
hsa-miR-5089-5p agaAATCCCACtcta GUGGGAUU m8a Created HPRO8_10484_G13962.1_135870467
hsa-miR-5186 agaAATCTCactcta AGAGAUUG m6b Disrupted HPRO8_10484_G13962.1_135870467
hsa-miR-5586-3p agaaatcTCACTCTa CAGAGUGA m7b Disrupted HPRO8_10484_G13962.1_135870467
hsa-miR-876-5p aGAAATCCcactcta UGGAUUUC m7b Created HPRO8_10484_G13962.1_135870467

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151604G>T COSM1038840 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193a-3p aaGCCAGTTattctt AACUGGCC m7a (m6a->m7a) HPRO8_10484_G13962.1_135870467
hsa-miR-193b-3p aaGCCAGTTattctt AACUGGCC m7a (m6a->m7a) HPRO8_10484_G13962.1_135870467
hsa-miR-221-5p aaGCCAGGTattctt ACCUGGCA m7a (m7a->m6a) HPRO8_10484_G13962.1_135870467
hsa-miR-619-3p aagCCAGGTattctt GACCUGGA m6b Disrupted HPRO8_10484_G13962.1_135870467
hsa-miR-8073 aaGCCAGGTattctt ACCUGGCA m7a (m7a->m6a) HPRO8_10484_G13962.1_135870467
hsa-miR-892b aAGCCAGTtattctt CACUGGCU m7b Created HPRO8_10484_G13962.1_135870467
Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151565C>A COSM266959 TCGA-AA-3672-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151559A>G COSM1038839 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1272 cctagTCATCATttt GAUGAUGA m7b Disrupted HPRO8_10483_G13961.1_135870383

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151291C>T COSM3123220 8066067 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p gcattAATGTGActa UUCACAUU m7b Created HPRO8_10482_G13960.1_135870142
hsa-miR-23a-3p gcattAATGTGActa AUCACAUU m7b Created HPRO8_10482_G13960.1_135870142
hsa-miR-23b-3p gcattAATGTGActa AUCACAUU m7b Created HPRO8_10482_G13960.1_135870142
hsa-miR-23c gcattAATGTGActa AUCACAUU m7b Created HPRO8_10482_G13960.1_135870142
hsa-miR-323a-3p gcatTAATGTGacta CACAUUAC m7a Created HPRO8_10482_G13960.1_135870142
hsa-miR-569 gCATTAACgtgacta AGUUAAUG m7b Disrupted HPRO8_10482_G13960.1_135870142

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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