SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145417
Gene Symbol: MSL2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151624T>C COSM3380412 PCSI_0052_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3167 aGAAATCCcactcta AGGAUUUC m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-4481 agaaatCCCACTCta GGAGUGGG m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-4654 agaaATCCCACtcta UGUGGGAU m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-4745-5p agaaatCCCACTCta UGAGUGGG m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-4769-5p agaaATCCCACtcta GGUGGGAU m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-5089-5p agaAATCCCACtcta GUGGGAUU m8a Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-5186 agaAATCTCactcta AGAGAUUG m6b Disrupted HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-5586-3p agaaatcTCACTCTa CAGAGUGA m7b Disrupted HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-876-5p aGAAATCCcactcta UGGAUUUC m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151604G>T COSM1038840 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193a-3p aaGCCAGTTattctt AACUGGCC m7a (m6a->m7a) HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-221-5p aaGCCAGGTattctt ACCUGGCA m7a (m7a->m6a) HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-193b-3p aaGCCAGTTattctt AACUGGCC m7a (m6a->m7a) HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-619-3p aagCCAGGTattctt GACCUGGA m6b Disrupted HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-8073 aaGCCAGGTattctt ACCUGGCA m7a (m7a->m6a) HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122
hsa-miR-892b aAGCCAGTtattctt CACUGGCU m7b Created HHKTB_3806_NM_018133|1983|2022|31.2859996187666|0.308941994283122

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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