SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145158
Gene Symbol: HBS1L

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.135037221C>A COSM1440626 TCGA-A6-5665-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6739-5p tgggatcCTTTCCCc UGGGAAAG m7b Disrupted HPSLB_6669_G8137.1_135358336
hsa-miR-3153 tgggatcCTTTCCCc GGGGAAAG m7b Disrupted HPSLB_6669_G8137.1_135358336
hsa-miR-4661-3p tgGGATCCTttcccc CAGGAUCC m7b (m7b->m6b) HPSLB_6669_G8137.1_135358336
hsa-miR-5093 tgggatCATTTCCcc AGGAAAUG m7b Created HPSLB_6669_G8137.1_135358336
hsa-miR-6733-5p tgggatcCTTTCCCc UGGGAAAG m7b Disrupted HPSLB_6669_G8137.1_135358336

Mutation Mutation ID Sample Name Cancer Type
chr6:g.135037214C>T COSM4462366 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3153 CTTTCCCCtgtcaca GGGGAAAG m8a Disrupted HPSLB_6669_G8137.1_135358336
hsa-miR-4504 ctttcccTTGTCACa UGUGACAA m7b Created HPSLB_6669_G8137.1_135358336
hsa-miR-542-3p ctttcccCTGTCACa UGUGACAG m7b Disrupted HPSLB_6669_G8137.1_135358336
hsa-miR-5584-5p cTTTCCCTtgtcaca CAGGGAAA m7b Created HPSLB_6669_G8137.1_135358336
hsa-miR-6783-5p ctTTCCCCTgtcaca UAGGGGAA m7b (m7b->m6b) HPSLB_6669_G8137.1_135358336

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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