SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001143843
Gene Symbol: TMEM106C

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.47968165T>A COSM4042152 TCGA-BR-4357-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1304-5p gGCCTCAAgacccag UUUGAGGC m7b Created HPTA1_2666_G3727.1_48361955
hsa-miR-193a-5p ggcctcAAGACCCAg UGGGUCUU m8a Created HPTA1_2666_G3727.1_48361955
hsa-miR-526b-5p ggcCTCAAGAcccag CUCUUGAG m7b Created HPTA1_2666_G3727.1_48361955

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47968159G>A COSM4042151 TCGA-BR-4184-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6089 tacattGGCCTCatg GGAGGCCG m6b Disrupted HPTA1_2666_G3727.1_48361955

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47968157TGG>TTT COSM315973 S00836 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4496 catacatTTTCCTCatg GAGGAAAC m7a Created HPTA1_2666_G3727.1_48361955

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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