SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001137551
Gene Symbol: LRRFIP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.237760141A>G COSM4876350 TCGA-KK-A59Z-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4725-5p gatacCAGGGTCcta AGACCCUG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-4774-5p gATACCAGggtccta UCUGGUAU m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-492 gataccaAGGTCCTa AGGACCUG m7a Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-504-5p gatacCAGGGTCcta AGACCCUG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-659-5p gataccAAGGTCCTa AGGACCUU m8a Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6813-3p gataCCAAGGTccta AACCUUGG m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-4725-5p gatacCAGGGTCcta AGACCCUG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-4774-5p gATACCAGggtccta UCUGGUAU m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-492 gataccaAGGTCCTa AGGACCUG m7a Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-504-5p gatacCAGGGTCcta AGACCCUG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-659-5p gataccAAGGTCCTa AGGACCUU m8a Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6813-3p gataCCAAGGTccta AACCUUGG m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-4725-5p gatacCAGGGTCcta AGACCCUG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-4774-5p gATACCAGggtccta UCUGGUAU m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-492 gataccaAGGTCCTa AGGACCUG m7a Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-504-5p gatacCAGGGTCcta AGACCCUG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-659-5p gataccAAGGTCCTa AGGACCUU m8a Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6813-3p gataCCAAGGTccta AACCUUGG m7b Disrupted HPSLC_10921_G12916.1_238668774

Mutation Mutation ID Sample Name Cancer Type
chr2:g.237760140A>G COSM3736252 07-058 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4798-5p ggATACCGAggtcct UUCGGUAU m7b (m6b->m7b) HPSLC_10921_G12916.1_238668774
hsa-miR-659-5p ggataccAAGGTCCt AGGACCUU m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6790-3p ggatacCGAGGTCct CGACCUCG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-6813-3p ggataCCAAGGTcct AACCUUGG m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6861-3p ggataccGAGGTCCt UGGACCUC m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-8088 ggaTACCGAGGtcct CCUCGGUA m8a Created HPSLC_10921_G12916.1_238668774
hsa-miR-4798-5p ggATACCGAggtcct UUCGGUAU m7b (m6b->m7b) HPSLC_10921_G12916.1_238668774
hsa-miR-659-5p ggataccAAGGTCCt AGGACCUU m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6790-3p ggatacCGAGGTCct CGACCUCG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-6813-3p ggataCCAAGGTcct AACCUUGG m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6861-3p ggataccGAGGTCCt UGGACCUC m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-8088 ggaTACCGAGGtcct CCUCGGUA m8a Created HPSLC_10921_G12916.1_238668774
hsa-miR-4798-5p ggATACCGAggtcct UUCGGUAU m7b (m6b->m7b) HPSLC_10921_G12916.1_238668774
hsa-miR-659-5p ggataccAAGGTCCt AGGACCUU m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6790-3p ggatacCGAGGTCct CGACCUCG m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-6813-3p ggataCCAAGGTcct AACCUUGG m7b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-6861-3p ggataccGAGGTCCt UGGACCUC m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-8088 ggaTACCGAGGtcct CCUCGGUA m8a Created HPSLC_10921_G12916.1_238668774

Mutation Mutation ID Sample Name Cancer Type
chr2:g.237760115G>A COSM1565659 TCGA-DY-A1H8-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-609 gacttccAACACCCt AGGGUGUU m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-6125 gaCTTCCGacaccct GCGGAAGG m6b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-609 gacttccAACACCCt AGGGUGUU m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-6125 gaCTTCCGacaccct GCGGAAGG m6b Disrupted HPSLC_10921_G12916.1_238668774
hsa-miR-609 gacttccAACACCCt AGGGUGUU m7b Created HPSLC_10921_G12916.1_238668774
hsa-miR-6125 gaCTTCCGacaccct GCGGAAGG m6b Disrupted HPSLC_10921_G12916.1_238668774

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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