SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001136501
Gene Symbol: ZNF844

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr19:g.12076834C>T COSM4471370 CSCC-29-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4311 tTCTCTTTCtttcaa GAAAGAGA m8a (m7a->m8a) HPSLB_3669_G4473.1_12187654
hsa-miR-488-3p ttctcttCCTTTCAa UUGAAAGG m7b Disrupted HPSLB_3669_G4473.1_12187654
hsa-miR-6077 ttCTCTTCCtttcaa GGGAAGAG m7b (m7b->m6b) HPSLB_3669_G4473.1_12187654

Mutation Mutation ID Sample Name Cancer Type
chr19:g.12076829C>A COSM991134 587376 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6077 acaatttCTCTTCCt GGGAAGAG m7b Disrupted HPSLB_3669_G4473.1_12187654
hsa-miR-577 acaaTTTATCTtcct UAGAUAAA m7b Created HPSLB_3669_G4473.1_12187654
hsa-miR-539-5p acaATTTCTCttcct GGAGAAAU m7b Disrupted HPSLB_3669_G4473.1_12187654

Mutation Mutation ID Sample Name Cancer Type
chr19:g.12076827T>A COSM2815311 SNU-283 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-539-5p caacaATTTCTCttc GGAGAAAU m7b Disrupted HPSLB_3669_G4473.1_12187654

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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