SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001134479
Gene Symbol: LRRC8D

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935209C>T COSM4843552 TCGA-EA-A3QE-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1303 tattTCTCTAAcaac UUUAGAGA m7b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-186-5p tatTTCTTTaacaac CAAAGAAU m6b Created HPTA1_328_G450.1_90400778
hsa-miR-2053 tatttctTTAACAac GUGUUAAU m6b Created HPTA1_328_G450.1_90400778
hsa-miR-3123 tatTTCTCTaacaac CAGAGAAU m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-3133 tatTTCTTTAacaac UAAAGAAC m7a Created HPTA1_328_G450.1_90400778
hsa-miR-3925-5p tatTTCTCTaacaac AAGAGAAC m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-539-5p tATTTCTCtaacaac GGAGAAAU m7b Disrupted HPTA1_328_G450.1_90400778

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935197C>A COSM5000470 PDA_045 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p ttggagtCACTTTat AAAAGUGC m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-17-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-20b-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-3609 ttggagTCACTTTat CAAAGUGA m7b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-508-5p tTGGAGTAactttat UACUCCAG m7a Created HPTA1_328_G450.1_90400778
hsa-miR-519d-3p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-526b-3p ttggagtCACTTTat GAAAGUGC m6b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-548ah-5p ttggagTCACTTTat AAAAGUGA m7b Disrupted HPTA1_328_G450.1_90400778
hsa-miR-548at-5p ttggagTAACTTTat AAAAGUUA m7b Created HPTA1_328_G450.1_90400778
hsa-miR-561-3p ttggagtAACTTTat CAAAGUUU m6b Created HPTA1_328_G450.1_90400778
hsa-miR-93-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPTA1_328_G450.1_90400778

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935172A>G COSM3806082 TCGA-D8-A1XQ-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-194-5p tccctCTGTTACcca UGUAACAG m7b Created HPTA1_327_G449.1_90400740

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89934629T>C COSM682769 TCGA-18-3414-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2467-3p ccaCCTCTGCcactg AGCAGAGG m7b Disrupted HPTA1_326_G448.1_90400194
hsa-miR-25-5p ccacCTCCGCCactg AGGCGGAG m7b Created HPTA1_326_G448.1_90400194
hsa-miR-3689d cCACCTCCgccactg GGGAGGUG m7b Created HPTA1_326_G448.1_90400194
hsa-miR-4257 ccACCTCTGccactg CCAGAGGU m7b (m7b->m6b) HPTA1_326_G448.1_90400194
hsa-miR-4730 ccaccTCCGCCActg CUGGCGGA m7b Created HPTA1_326_G448.1_90400194
hsa-miR-658 ccaCCTCCGCCactg GGCGGAGG m8a Created HPTA1_326_G448.1_90400194
hsa-miR-6851-5p cCACCTCCgccactg AGGAGGUG m7b Created HPTA1_326_G448.1_90400194

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser