SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001134479
Gene Symbol: LRRC8D

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935209C>T COSM4843552 TCGA-EA-A3QE-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1303 tattTCTCTAAcaac UUUAGAGA m7b Disrupted HPHES_203_G270.1_90400780
hsa-miR-186-5p tatTTCTTTaacaac CAAAGAAU m6b Created HPHES_203_G270.1_90400780
hsa-miR-2053 tatttctTTAACAac GUGUUAAU m6b Created HPHES_203_G270.1_90400780
hsa-miR-3123 tatTTCTCTaacaac CAGAGAAU m6b Disrupted HPHES_203_G270.1_90400780
hsa-miR-3133 tatTTCTTTAacaac UAAAGAAC m7a Created HPHES_203_G270.1_90400780
hsa-miR-539-5p tATTTCTCtaacaac GGAGAAAU m7b Disrupted HPHES_203_G270.1_90400780
hsa-miR-3925-5p tatTTCTCTaacaac AAGAGAAC m6b Disrupted HPHES_203_G270.1_90400780

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935197C>A COSM5000470 PDA_045 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-519d-3p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPHES_203_G270.1_90400780
hsa-miR-508-5p tTGGAGTAactttat UACUCCAG m7a Created HPHES_203_G270.1_90400780
hsa-miR-3609 ttggagTCACTTTat CAAAGUGA m7b Disrupted HPHES_203_G270.1_90400780
hsa-miR-526b-3p ttggagtCACTTTat GAAAGUGC m6b Disrupted HPHES_203_G270.1_90400780
hsa-miR-548ah-5p ttggagTCACTTTat AAAAGUGA m7b Disrupted HPHES_203_G270.1_90400780
hsa-miR-548at-5p ttggagTAACTTTat AAAAGUUA m7b Created HPHES_203_G270.1_90400780
hsa-miR-561-3p ttggagtAACTTTat CAAAGUUU m6b Created HPHES_203_G270.1_90400780
hsa-miR-93-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPHES_203_G270.1_90400780
hsa-miR-20b-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPHES_203_G270.1_90400780
hsa-miR-106a-5p ttggagtCACTTTat AAAAGUGC m6b Disrupted HPHES_203_G270.1_90400780
hsa-miR-17-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HPHES_203_G270.1_90400780

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935138A>G COSM1748651 B98-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5590-5p taaaatTATGGCAta UUGCCAUA m7b Disrupted HPHES_202_G269.1_90400700
hsa-miR-3064-3p taaaatTGTGGCAta UUGCCACA m7b Created HPHES_202_G269.1_90400700
hsa-miR-4775 tAAAATTAtggcata UUAAUUUU m7b Disrupted HPHES_202_G269.1_90400700
hsa-miR-590-3p TAAAATTAtggcata UAAUUUUA m8a Disrupted HPHES_202_G269.1_90400700

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935136T>G COSM1667699 HCC2998 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-590-3p ttTAAAATTAtggca UAAUUUUA m8a Disrupted HPHES_202_G269.1_90400700
hsa-miR-1-5p tttaaAAGTATGgca ACAUACUU m7b Created HPHES_202_G269.1_90400700
hsa-miR-4775 tttAAAATTAtggca UUAAUUUU m7b Disrupted HPHES_202_G269.1_90400700

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89933594C>A COSM4788684 CHC1182T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-580-3p tattATTCTCAtggt UUGAGAAU m7b Disrupted HPHES_201_G268.1_90399129

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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