SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001134479
Gene Symbol: LRRC8D

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935209C>T COSM4843552 TCGA-EA-A3QE-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1303 tattTCTCTAAcaac UUUAGAGA m7b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-186-5p tatTTCTTTaacaac CAAAGAAU m6b Created HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-2053 tatttctTTAACAac GUGUUAAU m6b Created HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-3123 tatTTCTCTaacaac CAGAGAAU m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-3133 tatTTCTTTAacaac UAAAGAAC m7a Created HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-3925-5p tatTTCTCTaacaac AAGAGAAC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-539-5p tATTTCTCtaacaac GGAGAAAU m7b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935197C>A COSM5000470 PDA_045 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p ttggagtCACTTTat AAAAGUGC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-17-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-20b-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-3609 ttggagTCACTTTat CAAAGUGA m7b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-508-5p tTGGAGTAactttat UACUCCAG m7a Created HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-519d-3p ttggagtCACTTTat CAAAGUGC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-526b-3p ttggagtCACTTTat GAAAGUGC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-548ah-5p ttggagTCACTTTat AAAAGUGA m7b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-548at-5p ttggagTAACTTTat AAAAGUUA m7b Created HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-561-3p ttggagtAACTTTat CAAAGUUU m6b Created HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-93-5p ttggagtCACTTTat CAAAGUGC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89935193G>T COSM1728729 038T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-5p aaacTTGGAGTcact AACUCCAA m7b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-3691-3p aaACTTGGagtcact ACCAAGUC m6b Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562
hsa-miR-5695 aaaCTTGGAGTcact ACUCCAAG m8a Disrupted HHKTB_227_NM_001134479|2537|2576|230.397560106414|0.574336971543562

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89933605T>C COSM219316 PD4006a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5089-3p tggtcAGTAGCAact AUGCUACU m7b Disrupted HHKTB_1286_NM_001134479|925|964|55.5274695220494|0.574336971543562
hsa-miR-628-5p tgGTCAGCAgcaact AUGCUGAC m7b (m6b->m7b) HHKTB_1286_NM_001134479|925|964|55.5274695220494|0.574336971543562
hsa-miR-888-3p tgGTCAGTagcaact GACUGACA m6b Disrupted HHKTB_1286_NM_001134479|925|964|55.5274695220494|0.574336971543562
hsa-miR-93-3p tggTCAGCAGcaact ACUGCUGA m7b Created HHKTB_1286_NM_001134479|925|964|55.5274695220494|0.574336971543562

Mutation Mutation ID Sample Name Cancer Type
chr1:g.89933594C>A COSM4788684 CHC1182T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-580-3p tattATTCTCAtggt UUGAGAAU m7b Disrupted HHKTB_1286_NM_001134479|925|964|55.5274695220494|0.574336971543562

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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