SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001131023
Gene Symbol: PEX5
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.7209798G>A COSM276713 TCGA-AA-A00N-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4460 cggtcCCACTATaac AUAGUGGU m7a Created HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395
hsa-miR-4648 cgGTCCCACtataac UGUGGGAC m7b (m6b->m7b) HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395
hsa-miR-4727-3p cggtCCCACTATaac AUAGUGGG m8a Created HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395
hsa-miR-6778-5p cggTCCCACTataac AGUGGGAG m7a Created HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395
hsa-miR-1296-3p cggtCCCACTataac GAGUGGGG m6b Created HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395
hsa-miR-1233-5p cggTCCCACTataac AGUGGGAG m7a Created HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395

Mutation Mutation ID Sample Name Cancer Type
chr12:g.7209793G>T COSM1513172 TCGA-55-8089-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1292-5p atatcCGTTCCCgct UGGGAACG m7b Created HHKTB_1331_NM_001131025|2210|2249|55.1130854211386|0.622146728237395

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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