SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001113207
Gene Symbol: TSTD1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.161038012A>G COSM898404 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4291 tCTGCTGAgaagcca UUCAGCAG m7b Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-4530 tCTGCTGGGaagcca CCCAGCAG m8a (m7a->m8a) HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-6787-3p tctGCTGAGAagcca UCUCAGCU m7a Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-6815-3p tctgctgAGAAGCCa UGGCUUCU m7b Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-7977 tctGCTGGGAAgcca UUCCCAGC m8a Created HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-4291 tCTGCTGAgaagcca UUCAGCAG m7b Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-4530 tCTGCTGGGaagcca CCCAGCAG m8a (m7a->m8a) HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-6787-3p tctGCTGAGAagcca UCUCAGCU m7a Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-6815-3p tctgctgAGAAGCCa UGGCUUCU m7b Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-7977 tctGCTGGGAAgcca UUCCCAGC m8a Created HHRBC_1032_BC3-2of3-SCL_2667

Mutation Mutation ID Sample Name Cancer Type
chr1:g.161037996A>C COSM1230734 587222 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-5p agctGGAAGATGagc CAUCUUCC m8a Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-3180-5p agCTGGAAGatgagc CUUCCAGA m7a (m7a->m6a) HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-141-5p agctGGAAGATGagc CAUCUUCC m8a Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-3180-5p agCTGGAAGatgagc CUUCCAGA m7a (m7a->m6a) HHRBC_1032_BC3-2of3-SCL_2667

Mutation Mutation ID Sample Name Cancer Type
chr1:g.161037984C>G COSM4478687 CSCC-46-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4708-5p aGCATCTCgttttct AGAGAUGC m7b Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548aa agcatcTGGTTTTct AAAAACCA m7b Created HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548ad-3p agcatcTCGTTTTCt GAAAACGA m8a Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548ap-3p agcatcTGGTTTTct AAAAACCA m7b Created HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548t-3p agcatcTGGTTTTct AAAAACCA m7b Created HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-4708-5p aGCATCTCgttttct AGAGAUGC m7b Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548aa agcatcTGGTTTTct AAAAACCA m7b Created HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548ad-3p agcatcTCGTTTTCt GAAAACGA m8a Disrupted HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548ap-3p agcatcTGGTTTTct AAAAACCA m7b Created HHRBC_1032_BC3-2of3-SCL_2667
hsa-miR-548t-3p agcatcTGGTTTTct AAAAACCA m7b Created HHRBC_1032_BC3-2of3-SCL_2667

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser