SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001102668
Gene Symbol: PSMA4
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr15:g.78546676T>C COSM1374789 TCGA-A6-5665-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3660 tggaTGTCAGTaaac ACUGACAG m7a Created HPSLB_2656_G3197.1_78839014
hsa-miR-3913-3p tgGATGTCagtaaac AGACAUCA m6b Created HPSLB_2656_G3197.1_78839014
hsa-miR-4637 tggatGTTAGTAaac UACUAACU m7a Disrupted HPSLB_2656_G3197.1_78839014
hsa-miR-489-3p tgGATGTCAgtaaac GUGACAUC m7b (m6b->m7b) HPSLB_2656_G3197.1_78839014
hsa-miR-6719-3p tggATGTCAGtaaac UCUGACAU m7b Created HPSLB_2656_G3197.1_78839014
hsa-miR-888-3p tggaTGTCAGTaaac GACUGACA m7b Created HPSLB_2656_G3197.1_78839014

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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