SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001099858
Gene Symbol: C7orf25

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.42910416A>G COSM3381932 PCSI_0090_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1226-5p tatagcaGCCCTCAc GUGAGGGC m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-296-3p tatagCAACCCTCac GAGGGUUG m8a Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-3616-3p tatagcaGCCCTCac CGAGGGCA m6b Created HPSLB_6976_G8523.1_42950000
hsa-miR-4446-3p tatagCAGCCCTcac CAGGGCUG m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-4721 tatagcAGCCCTCAc UGAGGGCU m8a Created HPSLB_6976_G8523.1_42950000
hsa-miR-6762-3p tatAGCAGCCctcac UGGCUGCU m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-6829-5p tataGCAGCCCtcac UGGGCUGC m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-1226-5p tatagcaGCCCTCAc GUGAGGGC m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-296-3p tatagCAACCCTCac GAGGGUUG m8a Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-3616-3p tatagcaGCCCTCac CGAGGGCA m6b Created HPSLB_6976_G8523.1_42950000
hsa-miR-4446-3p tatagCAGCCCTcac CAGGGCUG m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-4721 tatagcAGCCCTCAc UGAGGGCU m8a Created HPSLB_6976_G8523.1_42950000
hsa-miR-6762-3p tatAGCAGCCctcac UGGCUGCU m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-6829-5p tataGCAGCCCtcac UGGGCUGC m7b Created HPSLB_6976_G8523.1_42950000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.42910415C>T COSM601344 TCGA-67-3770-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1185-5p atagcaATCCTCaca AGAGGAUA m6b Created HPSLB_6976_G8523.1_42950000
hsa-miR-1224-5p atagcaaTCCTCACa GUGAGGAC m7a Created HPSLB_6976_G8523.1_42950000
hsa-miR-1226-5p atagcaaCCCTCACa GUGAGGGC m7a Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-296-3p atagCAACCCTCaca GAGGGUUG m8a Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-6834-5p atagcaaCCCTCACa GUGAGGGA m7a Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-6858-5p atagcaaTCCTCACa GUGAGGAG m7a Created HPSLB_6976_G8523.1_42950000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.42910403C>T COSM3881050 TCGA-CG-5723-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1468-3p acatcatTTTTGCat AGCAAAAU m6b Created HPSLB_6976_G8523.1_42950000
hsa-miR-3662 acaTCATTTTtgcat GAAAAUGA m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-518a-5p acatcatCTTTGCAt CUGCAAAG m7b Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-527 acatcatCTTTGCAt CUGCAAAG m7b Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-548aw acatcatTTTTGCAt GUGCAAAA m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-1468-3p acatcatTTTTGCat AGCAAAAU m6b Created HPSLB_6976_G8523.1_42950000
hsa-miR-3662 acaTCATTTTtgcat GAAAAUGA m7b Created HPSLB_6976_G8523.1_42950000
hsa-miR-518a-5p acatcatCTTTGCAt CUGCAAAG m7b Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-527 acatcatCTTTGCAt CUGCAAAG m7b Disrupted HPSLB_6976_G8523.1_42950000
hsa-miR-548aw acatcatTTTTGCAt GUGCAAAA m7b Created HPSLB_6976_G8523.1_42950000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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