SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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Transcript ID: | NM_001098268 |
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Gene Symbol: | LIG4 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
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chr13:g.108210643A>G | COSM3710998 | 44T | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-7112-3p | tttcataGTGATGCt | UGCAUCAC | m7b | Created | HPTA3_5880_G9065.1_108862988 |
hsa-miR-34c-3p | tttcaTAGTGATgct | AAUCACUA | m7b | Created | HPTA3_5880_G9065.1_108862988 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr13:g.108210632G>A | COSM4554966 | CSCC-44-T | [skin][head_neck][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-374b-3p | tgCTGCTAAGttgca | CUUAGCAG | m8a | Created | HPTA3_5880_G9065.1_108862988 |
hsa-miR-374c-3p | tgctGCTAAGTtgca | CACUUAGC | m7b | Created | HPTA3_5880_G9065.1_108862988 |
hsa-miR-424-5p | TGCTGCTGagttgca | CAGCAGCA | m8a | Disrupted | HPTA3_5880_G9065.1_108862988 |
hsa-miR-4291 | tgCTGCTGAgttgca | UUCAGCAG | m7b | (m7b->m6b) | HPTA3_5880_G9065.1_108862988 |
hsa-miR-922 | tgCTGCTGagttgca | GCAGCAGA | m6b | Disrupted | HPTA3_5880_G9065.1_108862988 |
hsa-miR-891b | tgctgctAAGTTGCa | UGCAACUU | m7b | Created | HPTA3_5880_G9065.1_108862988 |
hsa-miR-512-5p | tgctGCTGAGTtgca | CACUCAGC | m7b | Disrupted | HPTA3_5880_G9065.1_108862988 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr13:g.108210080C>T | COSM4846658 | TCGA-JW-A5VL-01 | [cervix][NS][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-3690 | accaatTCCAGGTag | ACCUGGAC | m7a | Disrupted | HPTA3_5879_G9064.1_108862430 |
hsa-miR-6128 | accaATTCCAGgtag | ACUGGAAU | m7b | Disrupted | HPTA3_5879_G9064.1_108862430 |
hsa-miR-619-3p | accaatTCCAGGTag | GACCUGGA | m7b | Disrupted | HPTA3_5879_G9064.1_108862430 |
hsa-miR-3140-5p | accaatTTCAGGTag | ACCUGAAU | m7a | Created | HPTA3_5879_G9064.1_108862430 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr13:g.108209768C>T | COSM4896607 | TCGA-RP-A695-06 | [skin][NS][malignant_melanoma][NS] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr13:g.108209760C>G | COSM1158856 | ICGC_0027 | [pancreas][NS][carcinoma][ductal_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-4524a-3p | atactCTGTCTCgtg | UGAGACAG | m7b | Created | HPTA3_5877_G9062.1_108862101 |
hsa-miR-4797-5p | atACTCTGTCtcgtg | GACAGAGU | m8a | Created | HPTA3_5877_G9062.1_108862101 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr13:g.108209756C>T | COSM4467904 | CSCC-4-T | [skin][head_neck][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-4731-3p | tctctCTTGTGTtgg | CACACAAG | m7b | Created | HPTA3_5877_G9062.1_108862101 |
hsa-miR-4801 | tctctCTTGTGTtgg | UACACAAG | m7b | Created | HPTA3_5877_G9062.1_108862101 |