SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001085451
Gene Symbol: LNP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.100402103A>T COSN1901599 RK027_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-9-3p tAGCTTTATcaactc AUAAAGCU m8a (m8a->m7a) HPRO8_10074_G13388.1_100120964
hsa-miR-3161 tagctTTATCAactc CUGAUAAG m6b Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-9-3p tAGCTTTATcaactc AUAAAGCU m8a (m8a->m7a) HPRO8_10074_G13388.1_100120964
hsa-miR-3161 tagctTTATCAactc CUGAUAAG m6b Disrupted HPRO8_10074_G13388.1_100120964

Mutation Mutation ID Sample Name Cancer Type
chr3:g.100402099C>T COSN7548027 8068976 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548a-3p ataatAGTTTTatca CAAAACUG m6b Created HPRO8_10074_G13388.1_100120964
hsa-miR-4429 ataatAGCTTTatca AAAAGCUG m6b Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-320d ataatAGCTTTatca AAAAGCUG m6b Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-320c ataatAGCTTTatca AAAAGCUG m6b Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-320b ataatAGCTTTatca AAAAGCUG m6b Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-320a ataatAGCTTTatca AAAAGCUG m6b Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-9-3p ataatAGCTTTATca AUAAAGCU m8a Disrupted HPRO8_10074_G13388.1_100120964
hsa-miR-7844-5p ataaTAGTTTTatca AAAACUAG m7a Created HPRO8_10074_G13388.1_100120964
hsa-miR-548f-3p ataatAGTTTTatca AAAAACUG m6b Created HPRO8_10074_G13388.1_100120964
hsa-miR-548e-3p ataatAGTTTTatca AAAAACUG m6b Created HPRO8_10074_G13388.1_100120964
hsa-miR-548az-3p ataatAGTTTTatca AAAAACUG m6b Created HPRO8_10074_G13388.1_100120964

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser