SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001083606
Gene Symbol: PTCH1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458099C>GC COSM1716861 2047147 [bone][mandible][odontogenic_keratocyst][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4676-5p ccACTGGCTgctgct GAGCCAGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-4690-3p ccacTGGGCTGCtgct GCAGCCCA m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5685 ccacTGGGCTGctgct ACAGCCCA m7b Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-575 ccACTGGCTgctgct GAGCCAGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458081G>T COSM88132 MB227PT [central_nervous_system][medulla][primitive_neuroectodermal_tumour-medulloblastoma][large_cell]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458080T>A COSM88130 MB227PT [central_nervous_system][medulla][primitive_neuroectodermal_tumour-medulloblastoma][large_cell]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-21-3p atcagcgTGGTGTTg CAACACCA m7b Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-3591-3p atcagcgTGGTGTTg AAACACCA m7b Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-21-3p atcagcgTGGTGTTg CAACACCA m7b Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-3591-3p atcagcgTGGTGTTg AAACACCA m7b Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-21-3p atcagcgTGGTGTTg CAACACCA m7b Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-3591-3p atcagcgTGGTGTTg AAACACCA m7b Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421

Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458061C>TC COSM87944 MB230PT [central_nervous_system][medulla][primitive_neuroectodermal_tumour-medulloblastoma][desmoplastic]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5093 gcaCATTTCCTcgtgt AGGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5093 gcaCATTTCCTcgtgt AGGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5093 gcaCATTTCCTcgtgt AGGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421

Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458061C>T COSM4395186 TCGA-EE-A3JD-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-539-5p gcacATTTCTCgtgt GGAGAAAU m7b Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5680 gcaCATTTCTCgtgt GAGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-539-5p gcacATTTCTCgtgt GGAGAAAU m7b Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5680 gcaCATTTCTCgtgt GAGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-539-5p gcacATTTCTCgtgt GGAGAAAU m7b Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5680 gcaCATTTCTCgtgt GAGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-1-3p gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-206 gcACATTCCtcgtgt UGGAAUGU m7b (m7b->m6b) HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-539-5p gcacATTTCTCgtgt GGAGAAAU m7b Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-5680 gcaCATTTCTCgtgt GAGAAAUG m8a Created HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421
hsa-miR-613 gcACATTCCTcgtgt AGGAAUGU m8a Disrupted HHKTB_2669_NM_001083602|3378|3417|37.5017611324289|0.128490195738421

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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