SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001082959
Gene Symbol: SCARB1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782781A>G COSM314999 S01453 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5096 tagtaGTGAAAaggg GUUUCACC m6b Created HPSLC_5195_G6160.1_125267339
hsa-miR-4999-3p taGTAGTGAaaaggg UCACUACC m7a (m6a->m7a) HPSLC_5195_G6160.1_125267339
hsa-miR-2681-5p tagtaGTAAAAaggg GUUUUACC m6b Disrupted HPSLC_5195_G6160.1_125267339

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782776G>A COSM4527039 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6832-3p gtaAAAAGGGctcaa ACCCUUUU m7b Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-1225-3p gtaaaaaGGGCTCAa UGAGCCCC m7a Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-6823-3p gtaaaaaAGGCTCAa UGAGCCUC m7a Created HPSLC_5195_G6160.1_125267339
hsa-miR-2114-3p gtaaaaaAGGCTCaa CGAGCCUC m6b Created HPSLC_5195_G6160.1_125267339
hsa-miR-129-2-3p gtaaaAAGGGCTcaa AAGCCCUU m7b Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-129-1-3p gtaaaAAGGGCTcaa AAGCCCUU m7b Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-1233-3p gtaaaaAGGGCTCAa UGAGCCCU m8a Disrupted HPSLC_5195_G6160.1_125267339

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser