SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001081559
Gene Symbol: CPSF4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.99444819T>C COSM4805759 CHC1743T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p ttcTTTTTGaaagct ACAAAAAA m6b Disrupted HPCB3_21381_G29406.1_99042431
hsa-miR-607 ttcttTTTGAAagct GUUCAAAU m6b Disrupted HPCB3_21381_G29406.1_99042431

Mutation Mutation ID Sample Name Cancer Type
chr7:g.99444814C>T COSM3642871 TCGA-HR-A2OH-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-5p gtgaATTCTTTttga CAAAGAAU m7b Disrupted HPCB3_21381_G29406.1_99042431
hsa-miR-3613-3p gtgaattTTTTTTGa ACAAAAAA m7b Created HPCB3_21381_G29406.1_99042431

Mutation Mutation ID Sample Name Cancer Type
chr7:g.99444814C>G COSM748295 TCGA-39-5031-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-5p gtgaATTCTTTttga CAAAGAAU m7b Disrupted HPCB3_21381_G29406.1_99042431
hsa-miR-548ac gtgaattGTTTTTGa CAAAAACC m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548ae-3p gtgaattGTTTTTGa CAAAAACU m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548ah-3p gtgaattGTTTTTGa CAAAAACU m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548am-3p gtgaattGTTTTTGa CAAAAACU m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548aq-3p gtgaattGTTTTTGa CAAAAACU m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548bb-3p gtgaattGTTTTTGa CAAAAACC m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548d-3p gtgaattGTTTTTGa CAAAAACC m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548h-3p gtgaattGTTTTTGa CAAAAACC m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548j-3p gtgaattGTTTTTGa CAAAAACU m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-548z gtgaattGTTTTTGa CAAAAACC m7a Created HPCB3_21381_G29406.1_99042431

Mutation Mutation ID Sample Name Cancer Type
chr7:g.99444805C>T COSM4822329 TCGA-EK-A2IP-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1324 ctgCTGTCTGtgaat CCAGACAG m7b Disrupted HPCB3_21381_G29406.1_99042431
hsa-miR-4719 ctgctgTTTGTGAat UCACAAAU m7a Created HPCB3_21381_G29406.1_99042431

Mutation Mutation ID Sample Name Cancer Type
chr7:g.99444804T>C COSM3883834 TCGA-BR-4361-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1324 gctgCTGTCTGtgaa CCAGACAG m7b Disrupted HPCB3_21381_G29406.1_99042431
hsa-miR-4438 gctgctGCCTGTGaa CACAGGCU m7a Created HPCB3_21381_G29406.1_99042431
hsa-miR-4514 gctgCTGCCTGTgaa ACAGGCAG m8a Created HPCB3_21381_G29406.1_99042431
hsa-miR-4692 gctgCTGCCTGtgaa UCAGGCAG m7b Created HPCB3_21381_G29406.1_99042431
hsa-miR-513a-5p gctgctgCCTGTGAa UUCACAGG m7b Created HPCB3_21381_G29406.1_99042431

Mutation Mutation ID Sample Name Cancer Type
chr7:g.99444797G>A COSM1623372 BN24T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-371b-3p gtcGGGCACTgctgt AAGUGCCC m7b Created HPCB3_21381_G29406.1_99042431
hsa-miR-4519 gtcgggCACTGCTGt CAGCAGUG m8a Created HPCB3_21381_G29406.1_99042431
hsa-miR-503-5p gtcgggCGCTGCTgt UAGCAGCG m7b Disrupted HPCB3_21381_G29406.1_99042431

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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