SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080433
Gene Symbol: CCDC85A

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.56375873G>A COSM1532019 TCGA-55-7570-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-22-3p ctctGCAGCTagctt AAGCUGCC m6b Disrupted HPSEF_11993_G14397.1_56603005

Mutation Mutation ID Sample Name Cancer Type
chr2:g.56375868C>G COSM721455 TCGA-66-2785-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4259 CCCAACTGtgcagct CAGUUGGG m8a Created HPSEF_11993_G14397.1_56603005
hsa-miR-3678-3p cccaaCTCTGCAGct CUGCAGAG m8a Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-3158-5p cccaacTCTGCAGct CCUGCAGA m7b Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-571 cCCAACTCtgcagct UGAGUUGG m7b Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-759 cccaACTCTGCagct GCAGAGUG m7a Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-2467-3p cccaaCTCTGCagct AGCAGAGG m6b Disrupted HPSEF_11993_G14397.1_56603005

Mutation Mutation ID Sample Name Cancer Type
chr2:g.56375860A>G COSM1021928 TCGA-A5-A0GW-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1262 acagtTCACCCAact AUGGGUGA m7b Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-4701-3p acagtTCACCCAact AUGGGUGA m7b Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-4649-5p acagtTCGCCCAact UGGGCGAG m7a Created HPSEF_11993_G14397.1_56603005
hsa-miR-3147 acagttcGCCCAACt GGUUGGGC m7b Created HPSEF_11993_G14397.1_56603005
hsa-miR-203b-3p aCAGTTCAcccaact UUGAACUG m7b Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-1228-5p acagttCGCCCAact GUGGGCGG m6b Created HPSEF_11993_G14397.1_56603005
hsa-miR-6729-5p acagtTCGCCCAact UGGGCGAG m7a Created HPSEF_11993_G14397.1_56603005
hsa-miR-6736-5p acagtTCACCCAact CUGGGUGA m7b Disrupted HPSEF_11993_G14397.1_56603005
hsa-miR-6741-5p acagttCACCCAact GUGGGUGC m6b Disrupted HPSEF_11993_G14397.1_56603005

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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