SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080407
Gene Symbol: GLB1L3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.134318930G>A COSM925225 TCGA-D1-A16J-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-27a-5p cagacAAGCCCacgc AGGGCUUA m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-4417 cagacaAGCCCACgc GGUGGGCU m7b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-5087 cagACAAACCCacgc GGGUUUGU m8a Created HPCB3_3946_G5469.1_134188813
hsa-miR-6793-5p cagacaAACCCACgc UGUGGGUU m7b Created HPCB3_3946_G5469.1_134188813
hsa-miR-6839-3p cagacAAACCCAcgc UUGGGUUU m7b Created HPCB3_3946_G5469.1_134188813

Mutation Mutation ID Sample Name Cancer Type
chr11:g.134318923C>G COSM4474810 CSCC-49-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1231 aaatctaCAGACAag GUGUCUGG m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-1251-5p aaatCTAGAGacaag ACUCUAGC m6b Created HPCB3_3946_G5469.1_134188813
hsa-miR-20b-3p aaatCTACAGacaag ACUGUAGU m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-376a-2-5p aAATCTACagacaag GGUAGAUU m7b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-376a-5p aAATCTACagacaag GUAGAUUC m7a Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-4777-5p aaATCTAGAgacaag UUCUAGAU m7b (m6b->m7b) HPCB3_3946_G5469.1_134188813
hsa-miR-517-5p aaaTCTAGAGacaag CCUCUAGA m7b Created HPCB3_3946_G5469.1_134188813
hsa-miR-518d-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-518e-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-518f-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-519a-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-519b-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-519c-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-520c-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-522-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-523-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-526a aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-593-3p aaatctAGAGACAag UGUCUCUG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-632 aaatctaCAGACAag GUGUCUGC m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-6818-3p aaatctAGAGACAAg UUGUCUCU m8a Created HPCB3_3946_G5469.1_134188813
hsa-miR-6895-3p aaatctAGAGACAag UGUCUCUC m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-1231 aaatctaCAGACAag GUGUCUGG m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-1251-5p aaatCTAGAGacaag ACUCUAGC m6b Created HPCB3_3946_G5469.1_134188813
hsa-miR-20b-3p aaatCTACAGacaag ACUGUAGU m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-376a-2-5p aAATCTACagacaag GGUAGAUU m7b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-376a-5p aAATCTACagacaag GUAGAUUC m7a Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-4777-5p aaATCTAGAgacaag UUCUAGAU m7b (m6b->m7b) HPCB3_3946_G5469.1_134188813
hsa-miR-517-5p aaaTCTAGAGacaag CCUCUAGA m7b Created HPCB3_3946_G5469.1_134188813
hsa-miR-518d-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-518e-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-518f-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-519a-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-519b-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-519c-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-520c-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-522-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-523-5p aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-526a aaaTCTAGAGacaag CUCUAGAG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-593-3p aaatctAGAGACAag UGUCUCUG m7a Created HPCB3_3946_G5469.1_134188813
hsa-miR-632 aaatctaCAGACAag GUGUCUGC m6b Disrupted HPCB3_3946_G5469.1_134188813
hsa-miR-6818-3p aaatctAGAGACAAg UUGUCUCU m8a Created HPCB3_3946_G5469.1_134188813
hsa-miR-6895-3p aaatctAGAGACAag UGUCUCUC m7a Created HPCB3_3946_G5469.1_134188813

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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