SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001079804
Gene Symbol: GAA
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.80112997C>T COSM4475715 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3179 aCCCCTTCatgcgga AGAAGGGG m7b Disrupted HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992
hsa-miR-6864-5p acCCCTTCAtgcgga UUGAAGGG m7b (m7b->m6b) HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992
hsa-miR-8060 acccCTTCATGcgga CCAUGAAG m7b Disrupted HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992

Mutation Mutation ID Sample Name Cancer Type
chr17:g.80112983G>T COSM311329 H2171 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6816-3p gctggGGTCCTTCta GAAGGACC m8a Created HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992
hsa-miR-1252-5p gctggggTCCTTCTa AGAAGGAA m7a Created HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992
hsa-miR-361-3p gCTGGGGGccttcta UCCCCCAG m7b Disrupted HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992
hsa-miR-4493 gctgggGGCCTTCTa AGAAGGCC m8a Disrupted HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992
hsa-miR-605-3p gctggggGCCTTCTa AGAAGGCA m7a Disrupted HHKTB_2141_NM_000152|2364|2403|41.0240259901708|1.32454204065992

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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