SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077498
Gene Symbol: FAM222B

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758618T>C COSM1381756 TCGA-G4-6309-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3187-3p ccaATGGCCActact UUGGCCAU m7b Created HPSLC_8551_G10126.1_27085641
hsa-miR-3677-5p ccaatGGCCACTact CAGUGGCC m7b Created HPSLC_8551_G10126.1_27085641
hsa-miR-4529-5p ccaATGGCCactact AGGCCAUC m6b Created HPSLC_8551_G10126.1_27085641
hsa-miR-591 ccaATGGTCactact AGACCAUG m6b Disrupted HPSLC_8551_G10126.1_27085641
hsa-miR-6073 ccaatggTCACTACt GGUAGUGA m7b Disrupted HPSLC_8551_G10126.1_27085641
hsa-miR-3187-3p ccaATGGCCActact UUGGCCAU m7b Created HPSLC_8551_G10126.1_27085641
hsa-miR-3677-5p ccaatGGCCACTact CAGUGGCC m7b Created HPSLC_8551_G10126.1_27085641
hsa-miR-4529-5p ccaATGGCCactact AGGCCAUC m6b Created HPSLC_8551_G10126.1_27085641
hsa-miR-591 ccaATGGTCactact AGACCAUG m6b Disrupted HPSLC_8551_G10126.1_27085641
hsa-miR-6073 ccaatggTCACTACt GGUAGUGA m7b Disrupted HPSLC_8551_G10126.1_27085641

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758605C>G COSM86275 TCGA-25-1326-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3158-3p cttccAAGCCCTgtg AAGGGCUU m7b Created HPSLC_8551_G10126.1_27085641

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser