SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077397
Gene Symbol: IRF2BP2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607723C>T COSM4460743 CSCC-49-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4433b-3p atgACTCCTacatcc CAGGAGUG m6b Disrupted HPTK1_3711_G4322.1_234743456

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607713T>G COSM3710644 41T [skin][sun_exposed_site][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-583 catCCTCTTTtgtgt CAAAGAGG m7b Disrupted HPTK1_3711_G4322.1_234743456

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607705C>G COSM1579176 Case2 [breast][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-25-5p tttgtgtCTCCGCCa AGGCGGAG m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-5091 tttgtGTCTCCGcca ACGGAGAC m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-658 tttgtgtCTCCGCCa GGCGGAGG m7a Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-8485 ttTGTGTGTccgcca CACACACA m7b (m6b->m7b) HPTK1_3711_G4322.1_234743456

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607704T>C COSM4957787 CHC303T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1908-5p ttgtgtCCCCGCCac CGGCGGGG m7b Created HPTK1_3711_G4322.1_234743456
hsa-miR-25-5p ttgtgtCTCCGCCac AGGCGGAG m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-4706 ttgtgTCCCCGCcac AGCGGGGA m7b Created HPTK1_3711_G4322.1_234743456
hsa-miR-4730 ttgtgtcTCCGCCAc CUGGCGGA m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-4749-5p ttgtgTCCCCGCcac UGCGGGGA m7b Created HPTK1_3711_G4322.1_234743456
hsa-miR-5091 ttgtGTCTCCGccac ACGGAGAC m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-658 ttgtgtCTCCGCCac GGCGGAGG m7a Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-663a ttgtgtCCCCGCCac AGGCGGGG m7b Created HPTK1_3711_G4322.1_234743456
hsa-miR-6787-5p ttgtgtCCCCGCCAc UGGCGGGG m8a Created HPTK1_3711_G4322.1_234743456

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607702C>T COSM679003 TCGA-37-4133-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-25-5p gtgtCTCCGCCacca AGGCGGAG m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-4730 gtgtcTCCGCCAcca CUGGCGGA m7b Disrupted HPTK1_3711_G4322.1_234743456
hsa-miR-5091 gtGTCTCCGccacca ACGGAGAC m7b (m7b->m6b) HPTK1_3711_G4322.1_234743456
hsa-miR-658 gtgtCTCCGCCacca GGCGGAGG m7a Disrupted HPTK1_3711_G4322.1_234743456

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607555C>NC COSM425626 TCGA-A2-A0CU-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-504-3p gttCACTCCactacc GGGAGUGC m6b Disrupted HPTK1_3710_G4321.1_234743317
hsa-miR-6849-5p gttcacTCCACTacc GAGUGGAU m6b Disrupted HPTK1_3710_G4321.1_234743317

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607389G>T COSM340557 LUAD-F00365 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-545-3p ccccgcTTTGCTGca UCAGCAAA m7b Created HPTK1_3709_G4320.1_234743142

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607366G>T COSM1340247 TCGA-G4-6628-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4530 cacgagCTGCTGGag CCCAGCAG m7b Created HPTK1_3708_G4319.1_234743113
hsa-miR-4660 cacGAGCTGCtggag UGCAGCUC m7b Created HPTK1_3708_G4319.1_234743113
hsa-miR-646 cacgAGCTGCTggag AAGCAGCU m7b Created HPTK1_3708_G4319.1_234743113
hsa-miR-6512-3p cacgagcGGCTGGAg UUCCAGCC m7b Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-6720-5p cacgagcGGCTGGAg UUCCAGCC m7b Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-6743-3p cacGAGCGGCTggag AGCCGCUC m8a Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-6849-3p cacgagcGGCTGGag ACCAGCCU m6b Disrupted HPTK1_3708_G4319.1_234743113

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607361G>T COSM126747 HN_62672 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-155-3p gcggcTGTAGGAcac CUCCUACA m7b Created HPTK1_3708_G4319.1_234743113
hsa-miR-4691-5p gcggcTGGAGGACac GUCCUCCA m8a Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-6512-3p gcGGCTGGAggacac UUCCAGCC m7b (m7b->m6b) HPTK1_3708_G4319.1_234743113
hsa-miR-6720-5p gcGGCTGGAggacac UUCCAGCC m7b (m7b->m6b) HPTK1_3708_G4319.1_234743113
hsa-miR-676-3p gcggctgTAGGACAc CUGUCCUA m7b Created HPTK1_3708_G4319.1_234743113
hsa-miR-6792-3p gcggcTGGAGGAcac CUCCUCCA m7b Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-6849-3p gcGGCTGGaggacac ACCAGCCU m6b Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-766-3p gcgGCTGGAGgacac ACUCCAGC m7b Disrupted HPTK1_3708_G4319.1_234743113

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607351A>G COSM1662301 ccRCC-15 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4506 gacACCCATTTtgtg AAAUGGGU m8a Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-4698 gacaccCATTTTGtg UCAAAAUG m7b Disrupted HPTK1_3708_G4319.1_234743113

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607350T>A COSM334261 LUAD-B01811 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4506 acACCCATTTtgtgc AAAUGGGU m8a Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-4698 acaccCATTTTGtgc UCAAAAUG m7b Disrupted HPTK1_3708_G4319.1_234743113
hsa-miR-4719 acacccaATTTGTGc UCACAAAU m7b Created HPTK1_3708_G4319.1_234743113

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607170A>T COSM1492035 TCGA-B4-5836-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1226-3p ttGCTGGTGAtgtga UCACCAGC m8a Created HPTK1_3707_G4318.1_234742922
hsa-miR-3925-3p ttgCTGGAGatgtga ACUCCAGU m6b Disrupted HPTK1_3707_G4318.1_234742922
hsa-miR-4733-3p ttgCTGGTGatgtga CCACCAGG m6b Created HPTK1_3707_G4318.1_234742922
hsa-miR-499a-3p ttgctgGTGATGTga AACAUCAC m7b Created HPTK1_3707_G4318.1_234742922
hsa-miR-499b-3p ttgctgGTGATGTga AACAUCAC m7b Created HPTK1_3707_G4318.1_234742922
hsa-miR-766-3p ttGCTGGAGatgtga ACUCCAGC m7b (m7b->m6b) HPTK1_3707_G4318.1_234742922

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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