SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077397
Gene Symbol: IRF2BP2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607389G>T COSM340557 LUAD-F00365 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-545-3p ccccgcTTTGCTGca UCAGCAAA m7b Created HHRBC_1387_BC3-2of3-SCL_5748
Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607373C>T COSM376531 LUAD-NYU847 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607366G>T COSM1340247 TCGA-G4-6628-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4530 cacgagCTGCTGGag CCCAGCAG m7b Created HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-4660 cacGAGCTGCtggag UGCAGCUC m7b Created HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-646 cacgAGCTGCTggag AAGCAGCU m7b Created HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6512-3p cacgagcGGCTGGAg UUCCAGCC m7b Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6720-5p cacgagcGGCTGGAg UUCCAGCC m7b Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6743-3p cacGAGCGGCTggag AGCCGCUC m8a Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6849-3p cacgagcGGCTGGag ACCAGCCU m6b Disrupted HHRBC_1387_BC3-2of3-SCL_5748

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607361G>T COSM126747 HN_62672 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-155-3p gcggcTGTAGGAcac CUCCUACA m7b Created HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-4691-5p gcggcTGGAGGACac GUCCUCCA m8a Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6512-3p gcGGCTGGAggacac UUCCAGCC m7b (m7b->m6b) HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6720-5p gcGGCTGGAggacac UUCCAGCC m7b (m7b->m6b) HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-676-3p gcggctgTAGGACAc CUGUCCUA m7b Created HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6792-3p gcggcTGGAGGAcac CUCCUCCA m7b Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-6849-3p gcGGCTGGaggacac ACCAGCCU m6b Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-766-3p gcgGCTGGAGgacac ACUCCAGC m7b Disrupted HHRBC_1387_BC3-2of3-SCL_5748

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607351A>G COSM1662301 ccRCC-15 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4506 gacACCCATTTtgtg AAAUGGGU m8a Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-4698 gacaccCATTTTGtg UCAAAAUG m7b Disrupted HHRBC_1387_BC3-2of3-SCL_5748

Mutation Mutation ID Sample Name Cancer Type
chr1:g.234607350T>A COSM334261 LUAD-B01811 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4506 acACCCATTTtgtgc AAAUGGGU m8a Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-4698 acaccCATTTTGtgc UCAAAAUG m7b Disrupted HHRBC_1387_BC3-2of3-SCL_5748
hsa-miR-4719 acacccaATTTGTGc UCACAAAU m7b Created HHRBC_1387_BC3-2of3-SCL_5748

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser