SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077349
Gene Symbol: ZNF682

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.20006540C>T COSM77157 TCGA-24-1103-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8087 gggaAAGTCTTtaac GAAGACUU m7b Created HPCB3_11485_G15624.1_20117339
hsa-miR-4432 gggaaAGTCTTTaac AAAGACUC m7a Created HPCB3_11485_G15624.1_20117339
hsa-miR-4484 gggaaaGCCTTTaac AAAAGGCG m6b Disrupted HPCB3_11485_G15624.1_20117339
hsa-miR-7161-5p gggaaAGTCTTTAac UAAAGACU m8a Created HPCB3_11485_G15624.1_20117339
hsa-miR-6768-3p gggaaaGCCTTTaac CAAAGGCC m6b Disrupted HPCB3_11485_G15624.1_20117339
hsa-miR-548u gggaaAGTCTTTaac CAAAGACU m7b Created HPCB3_11485_G15624.1_20117339
hsa-miR-548an gggaaaGCCTTTaac AAAAGGCA m6b Disrupted HPCB3_11485_G15624.1_20117339

Mutation Mutation ID Sample Name Cancer Type
chr19:g.20006458A>C COSM1391894 TCGA-CM-6674-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-320c gtggcaaAGCTTTTa AAAAGCUG m7a Disrupted HPCB3_11484_G15623.1_20117260
hsa-miR-320d gtggcaaAGCTTTTa AAAAGCUG m7a Disrupted HPCB3_11484_G15623.1_20117260
hsa-miR-4429 gtggcaaAGCTTTTa AAAAGCUG m7a Disrupted HPCB3_11484_G15623.1_20117260
hsa-miR-6501-5p gTGGCAACgctttta AGUUGCCA m7b Created HPCB3_11484_G15623.1_20117260
hsa-miR-320b gtggcaaAGCTTTTa AAAAGCUG m7a Disrupted HPCB3_11484_G15623.1_20117260
hsa-miR-320a gtggcaaAGCTTTTa AAAAGCUG m7a Disrupted HPCB3_11484_G15623.1_20117260
hsa-miR-1251-3p gtgGCAAAGCtttta CGCUUUGC m7b Disrupted HPCB3_11484_G15623.1_20117260

Mutation Mutation ID Sample Name Cancer Type
chr19:g.20006436C>T COSM3892064 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-545-5p atcaattTTTACTGa UCAGUAAA m7b Created HPCB3_11484_G15623.1_20117260
hsa-miR-548c-3p atcaATTTTTactga CAAAAAUC m6b Created HPCB3_11484_G15623.1_20117260
hsa-miR-6507-5p atcaATTCTTactga GAAGAAUA m6b Disrupted HPCB3_11484_G15623.1_20117260

Mutation Mutation ID Sample Name Cancer Type
chr19:g.20006359C>A COSM3102004 HCC2998 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4712-3p agaggtTCTCATacc AAUGAGAG m6b Disrupted HPCB3_11483_G15622.1_20117147
hsa-miR-589-5p agaGGTTCTCAtacc UGAGAACC m8a Disrupted HPCB3_11483_G15622.1_20117147

Mutation Mutation ID Sample Name Cancer Type
chr19:g.20006147G>A COSM1480830 TCGA-A1-A0SN-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5707 gTCAAACGctataaa ACGUUUGA m7b Disrupted HPCB3_11482_G15621.1_20116974
hsa-miR-4255 gtcaAACACTataaa CAGUGUUC m6b Created HPCB3_11482_G15621.1_20116974

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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