SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001048194
Gene Symbol: RCC1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.28535977C>A COSM907984 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30c-1-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-30c-2-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-3607-5p ccatcTCACATGagg GCAUGUGA m7b Created HPCB3_182_G248.1_28862489
hsa-miR-6788-5p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-6871-5p ccatCTCCCATGagg CAUGGGAG m8a Disrupted HPCB3_182_G248.1_28862489
hsa-miR-6878-5p ccaTCTCCCatgagg AGGGAGAA m6b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-1273f CCATCTCCcatgagg GGAGAUGG m8a Disrupted HPCB3_182_G248.1_28862489
hsa-miR-30c-1-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-30c-2-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-3607-5p ccatcTCACATGagg GCAUGUGA m7b Created HPCB3_182_G248.1_28862489
hsa-miR-6788-5p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPCB3_182_G248.1_28862489
hsa-miR-6871-5p ccatCTCCCATGagg CAUGGGAG m8a Disrupted HPCB3_182_G248.1_28862489
hsa-miR-6878-5p ccaTCTCCCatgagg AGGGAGAA m6b Disrupted HPCB3_182_G248.1_28862489

Mutation Mutation ID Sample Name Cancer Type
chr1:g.28535971C>T COSM315467 S01512 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cctttgCCATCTCCc GGAGAUGG m8a Disrupted HPCB3_182_G248.1_28862489

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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