SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001042549
Gene Symbol: NSL1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.212738649C>T COSM3483167 TCGA-D9-A1JX-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3148 ggaTTTTTCCAagtt UGGAAAAA m8a Created HPSLC_1991_G2316.1_212911996
hsa-miR-3153 ggatTTTCCCaagtt GGGGAAAG m6b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-3978 ggattTTTCCAagtt GUGGAAAG m6b Created HPSLC_1991_G2316.1_212911996
hsa-miR-450a-1-3p ggattTTCCCAAgtt AUUGGGAA m7b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-4668-3p GGATTTTCccaagtt GAAAAUCC m8a Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-4668-5p ggaTTTTCCCaagtt AGGGAAAA m7b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-548c-3p gGATTTTTccaagtt CAAAAAUC m7b Created HPSLC_1991_G2316.1_212911996
hsa-miR-6124 ggaTTTTCCCaagtt GGGAAAAG m7a Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-6733-5p ggatTTTCCCAagtt UGGGAAAG m7a Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-6739-5p ggatTTTCCCAagtt UGGGAAAG m7a Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-890 ggattttTCCAAGTt UACUUGGA m7b Created HPSLC_1991_G2316.1_212911996

Mutation Mutation ID Sample Name Cancer Type
chr1:g.212738648C>T COSM1338685 TCGA-D5-6927-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3153 gatTTTCCCaagttc GGGGAAAG m6b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-450a-1-3p gattTTCCCAAgttc AUUGGGAA m7b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-4668-5p gaTTTTCCCaagttc AGGGAAAA m7b (m7b->m6b) HPSLC_1991_G2316.1_212911996
hsa-miR-539-5p gatTTTCTCaagttc GGAGAAAU m6b Created HPSLC_1991_G2316.1_212911996
hsa-miR-6124 gaTTTTCCCaagttc GGGAAAAG m7a (m7a->m6a) HPSLC_1991_G2316.1_212911996
hsa-miR-6733-5p gatTTTCCCAagttc UGGGAAAG m7a Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-6739-5p gatTTTCCCAagttc UGGGAAAG m7a Disrupted HPSLC_1991_G2316.1_212911996

Mutation Mutation ID Sample Name Cancer Type
chr1:g.212738636G>A COSM532368 TCGA-64-5781-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1200 ttCTCAGGAtgcagc CUCCUGAG m7b (m7b->m6b) HPSLC_1991_G2316.1_212911996
hsa-miR-20a-3p ttctcagAATGCAGc ACUGCAUU m7b Created HPSLC_1991_G2316.1_212911996
hsa-miR-324-5p ttctcaGGATGCagc CGCAUCCC m6b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-4324 tTCTCAGGatgcagc CCCUGAGA m7b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-4329 tTCTCAGGatgcagc CCUGAGAC m7a Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-4793-5p ttctCAGGATGcagc ACAUCCUG m7b Disrupted HPSLC_1991_G2316.1_212911996
hsa-miR-544b ttCTCAGGatgcagc ACCUGAGG m6b Disrupted HPSLC_1991_G2316.1_212911996

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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