SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001042543
Gene Symbol: GLRA3
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.174715568T>A COSM1539875 TCGA-53-7624-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-569 ttcagATTAACatta AGUUAAUG m6b Disrupted HPCB3_17834_G24471.1_175636713
hsa-miR-4307 ttcagatAAACATTa AAUGUUUU m7a Created HPCB3_17834_G24471.1_175636713
hsa-miR-33a-3p ttcagatAAACATTa CAAUGUUU m7b Created HPCB3_17834_G24471.1_175636713
hsa-miR-2053 ttcagATTAACAtta GUGUUAAU m7b Disrupted HPCB3_17834_G24471.1_175636713

Mutation Mutation ID Sample Name Cancer Type
chr4:g.174715550G>C COSM4550896 CSCC-5-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4644 ctttcCTCTCCAatg UGGAGAGA m7a Created HPCB3_17834_G24471.1_175636713
hsa-miR-4531 ctttccTCTCCAatg AUGGAGAA m6b Created HPCB3_17834_G24471.1_175636713
hsa-miR-4520-3p ctttcCTGTCCAAtg UUGGACAG m8a Disrupted HPCB3_17834_G24471.1_175636713
hsa-miR-4520-2-3p ctttccTGTCCAAtg UUUGGACA m7b Disrupted HPCB3_17834_G24471.1_175636713
hsa-miR-5192 ctttcCTCTCCaatg AGGAGAGU m6b Created HPCB3_17834_G24471.1_175636713
hsa-miR-620 ctttccTCTCCAatg AUGGAGAU m6b Created HPCB3_17834_G24471.1_175636713
hsa-miR-6859-5p ctTTCCTCTCcaatg GAGAGGAA m8a Created HPCB3_17834_G24471.1_175636713
hsa-miR-4306 ctttcCTCTCCAatg UGGAGAGA m7a Created HPCB3_17834_G24471.1_175636713
hsa-miR-3916 ctTTCCTCTccaatg AAGAGGAA m7b (m6b->m7b) HPCB3_17834_G24471.1_175636713
hsa-miR-3125 ctTTCCTCTccaatg UAGAGGAA m7b (m6b->m7b) HPCB3_17834_G24471.1_175636713
hsa-miR-185-5p ctttcCTCTCCAatg UGGAGAGA m7a Created HPCB3_17834_G24471.1_175636713
hsa-miR-1270 ctttccTCTCCAatg CUGGAGAU m6b Created HPCB3_17834_G24471.1_175636713
Mutation Mutation ID Sample Name Cancer Type
chr4:g.174715543G>T COSM4774559 GC_356T-GC_356N [stomach][NS][carcinoma][diffuse_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr4:g.174715542G>C COSM296764 TCGA-AA-3941-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-143-3p tccaatgCATCTCAa UGAGAUGA m7a Created HPCB3_17834_G24471.1_175636713
hsa-miR-33a-5p tcCAATGCAtctcaa GUGCAUUG m7b (m6b->m7b) HPCB3_17834_G24471.1_175636713
hsa-miR-33b-5p tcCAATGCAtctcaa GUGCAUUG m7b (m6b->m7b) HPCB3_17834_G24471.1_175636713
hsa-miR-4708-5p tccaatGCATCTCaa AGAGAUGC m7b Created HPCB3_17834_G24471.1_175636713
hsa-miR-4770 tccaatgCATCTCAa UGAGAUGA m7a Created HPCB3_17834_G24471.1_175636713
hsa-miR-586 tccAATGCATctcaa UAUGCAUU m7b Created HPCB3_17834_G24471.1_175636713
hsa-miR-6088 tccaatgCATCTCaa AGAGAUGA m6b Created HPCB3_17834_G24471.1_175636713
hsa-miR-1273f tccaatgCATCTCaa GGAGAUGG m6b Created HPCB3_17834_G24471.1_175636713

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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