SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040616
Gene Symbol: LINS

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569316C>T COSM3499699 TCGA-EE-A29S-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3115 atcttttCCCATATa AUAUGGGU m7a Disrupted HPTK1_11141_G13237.1_101109506
hsa-miR-3148 atcTTTTTCCAtata UGGAAAAA m8a Created HPTK1_11141_G13237.1_101109506
hsa-miR-3153 atctTTTCCCatata GGGGAAAG m6b Disrupted HPTK1_11141_G13237.1_101109506
hsa-miR-3688-3p atcttTTTCCATAta UAUGGAAA m8a Created HPTK1_11141_G13237.1_101109506
hsa-miR-4668-5p atcTTTTCCCatata AGGGAAAA m7b Disrupted HPTK1_11141_G13237.1_101109506
hsa-miR-6124 atCTTTTCCCatata GGGAAAAG m8a Disrupted HPTK1_11141_G13237.1_101109506
hsa-miR-6871-5p atctttTCCCATata CAUGGGAG m6b Disrupted HPTK1_11141_G13237.1_101109506
hsa-miR-8076 atcttttTCCATATa UAUAUGGA m7b Created HPTK1_11141_G13237.1_101109506

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569303A>G COSM2200304 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6839-5p tAATCCAGctgcact UCUGGAUU m7b Created HPTK1_11141_G13237.1_101109506
hsa-miR-3944-5p taatccaGCTGCACt UGUGCAGC m7b Created HPTK1_11141_G13237.1_101109506
hsa-miR-1207-3p taatCCAGCTGcact UCAGCUGG m7b Created HPTK1_11141_G13237.1_101109506
hsa-miR-1287-5p taATCCAGCtgcact UGCUGGAU m7b (m6b->m7b) HPTK1_11141_G13237.1_101109506
hsa-miR-1301-3p taatccAGCTGCAct UUGCAGCU m7b Created HPTK1_11141_G13237.1_101109506
hsa-miR-143-5p taatccaACTGCACt GGUGCAGU m7b Disrupted HPTK1_11141_G13237.1_101109506
hsa-miR-378j tAATCCAGctgcact ACUGGAUU m7b Created HPTK1_11141_G13237.1_101109506
hsa-miR-5047 taatccAGCTGCAct UUGCAGCU m7b Created HPTK1_11141_G13237.1_101109506

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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