SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040616
Gene Symbol: LINS

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569323A>G COSM3706473 HCC82T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5003-3p aaGAAAAGTcttttc UACUUUUC m7b (m6b->m7b) HPSEF_8478_G10159.1_101109502
hsa-miR-548u aagaaaAGTCTTTtc CAAAGACU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-627-3p aAGAAAAGtcttttc UCUUUUCU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-7161-5p aagaaaAGTCTTTtc UAAAGACU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-8087 aagaaAAGTCTTttc GAAGACUU m7b Created HPSEF_8478_G10159.1_101109502

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569321C>T COSM3499700 TCGA-DA-A1I5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3148 gaaaaatTTTTTCCc UGGAAAAA m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-4282 gaaAAATTTTttccc UAAAAUUU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-6124 gaaaaatCTTTTCCc GGGAAAAG m7b Disrupted HPSEF_8478_G10159.1_101109502

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569316C>T COSM3499699 TCGA-EE-A29S-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3115 atcttttCCCATATa AUAUGGGU m7a Disrupted HPSEF_8478_G10159.1_101109502
hsa-miR-3148 atcTTTTTCCAtata UGGAAAAA m8a Created HPSEF_8478_G10159.1_101109502
hsa-miR-3153 atctTTTCCCatata GGGGAAAG m6b Disrupted HPSEF_8478_G10159.1_101109502
hsa-miR-3688-3p atcttTTTCCATAta UAUGGAAA m8a Created HPSEF_8478_G10159.1_101109502
hsa-miR-4668-5p atcTTTTCCCatata AGGGAAAA m7b Disrupted HPSEF_8478_G10159.1_101109502
hsa-miR-6124 atCTTTTCCCatata GGGAAAAG m8a Disrupted HPSEF_8478_G10159.1_101109502
hsa-miR-6871-5p atctttTCCCATata CAUGGGAG m6b Disrupted HPSEF_8478_G10159.1_101109502
hsa-miR-8076 atcttttTCCATATa UAUAUGGA m7b Created HPSEF_8478_G10159.1_101109502

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569303A>G COSM2200304 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1207-3p taatCCAGCTGcact UCAGCUGG m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-1287-5p taATCCAGCtgcact UGCUGGAU m7b (m6b->m7b) HPSEF_8478_G10159.1_101109502
hsa-miR-1301-3p taatccAGCTGCAct UUGCAGCU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-143-5p taatccaACTGCACt GGUGCAGU m7b Disrupted HPSEF_8478_G10159.1_101109502
hsa-miR-378j tAATCCAGctgcact ACUGGAUU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-3944-5p taatccaGCTGCACt UGUGCAGC m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-5047 taatccAGCTGCAct UUGCAGCU m7b Created HPSEF_8478_G10159.1_101109502
hsa-miR-6839-5p tAATCCAGctgcact UCUGGAUU m7b Created HPSEF_8478_G10159.1_101109502

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569254C>A COSM1213424 587386 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1279 aataaaAATATGAac UCAUAUUG m7a Created HPSEF_8477_G10158.1_101109455
hsa-miR-376a-3p aataaaaCTATGAac AUCAUAGA m6b Disrupted HPSEF_8477_G10158.1_101109455
hsa-miR-376b-3p aataaaaCTATGAac AUCAUAGA m6b Disrupted HPSEF_8477_G10158.1_101109455
hsa-miR-5007-3p aataaaaATATGAac AUCAUAUG m6b Created HPSEF_8477_G10158.1_101109455

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569249A>G COSM1375668 TCGA-A6-3809-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-124-5p aactaTGAACACttt CGUGUUCA m7b Disrupted HPSEF_8477_G10158.1_101109455
hsa-miR-376a-3p aaCTATGAacacttt AUCAUAGA m6b Disrupted HPSEF_8477_G10158.1_101109455
hsa-miR-376b-3p aaCTATGAacacttt AUCAUAGA m6b Disrupted HPSEF_8477_G10158.1_101109455
hsa-miR-3912-5p aactATGGACActtt AUGUCCAU m7b Created HPSEF_8477_G10158.1_101109455
hsa-miR-4255 aactatGAACACTtt CAGUGUUC m7b Disrupted HPSEF_8477_G10158.1_101109455

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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