SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040437
Gene Symbol: C6orf48

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839698A>G COSN5087271 BN43T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839655G>A COSM164507 PD4937a [breast][NS][carcinoma][HER-positive_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30a-3p aatgcCTGAAAatta CUUUCAGU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-30d-3p aatgcCTGAAAatta CUUUCAGU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-30e-3p aatgcCTGAAAatta CUUUCAGU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4692 aaTGCCTGAaaatta UCAGGCAG m7a (m7a->m6a) HPTK1_25007_G29909.1_31807424
hsa-miR-4742-5p aaTGCCTGAaaatta UCAGGCAA m7a (m7a->m6a) HPTK1_25007_G29909.1_31807424
hsa-miR-6715b-5p aaTGCCTGaaaatta ACAGGCAC m6b Disrupted HPTK1_25007_G29909.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839653C>T COSM223072 ME009T [skin][trunk][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30a-3p aaaatgcCTGAAAat CUUUCAGU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-30d-3p aaaatgcCTGAAAat CUUUCAGU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-30e-3p aaaatgcCTGAAAat CUUUCAGU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4269 aaaaTGCCTGaaaat GCAGGCAC m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4514 aaaaTGCCTGaaaat ACAGGCAG m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4692 aaaaTGCCTGAaaat UCAGGCAG m7a Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4742-5p aaaaTGCCTGAaaat UCAGGCAA m7a Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-498 aaaatGCTTGAAAat UUUCAAGC m8a Created HPTK1_25007_G29909.1_31807424
hsa-miR-6715b-5p aaaaTGCCTGaaaat ACAGGCAC m6b Disrupted HPTK1_25007_G29909.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839645A>G COSM3347020 TCGA-HJ-7597-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p ttgggggGAAAATGc ACAUUUUC m7b Created HPTK1_25007_G29909.1_31807424
hsa-miR-153-5p ttgggggAAAAATGc UCAUUUUU m7b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-361-3p tTGGGGGAaaaatgc UCCCCCAG m7a Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-3679-3p ttGGGGGAAaaatgc CUUCCCCC m7b (m7b->m6b) HPTK1_25007_G29909.1_31807424
hsa-miR-4446-5p ttggGGGAAAaatgc AUUUCCCU m6b Disrupted HPTK1_25007_G29909.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839644GA>G COSM279446 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p attggggGAAAATGc ACAUUUUC m7b Created HPTK1_25007_G29909.1_31807424
hsa-miR-361-3p atTGGGGGAaaaatgc UCCCCCAG m7a (m7a->m6a) HPTK1_25007_G29909.1_31807424
hsa-miR-3679-3p attGGGGGAAaaatgc CUUCCCCC m7b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4446-5p attggGGGAAAaatgc AUUUCCCU m6b Disrupted HPTK1_25007_G29909.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839643G>T COSM3624808 TCGA-D3-A2J8-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-361-3p tatTGGGGGAaaaat UCCCCCAG m7a Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-3679-3p tattGGGGGAAaaat CUUCCCCC m7b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-4446-5p tattggGGGAAAaat AUUUCCCU m6b Disrupted HPTK1_25007_G29909.1_31807424
hsa-miR-500b-3p tatTGGGTGaaaaat GCACCCAG m6b Created HPTK1_25007_G29909.1_31807424
hsa-miR-5096 tattgGGTGAAAaat GUUUCACC m7b Created HPTK1_25007_G29909.1_31807424
hsa-miR-6802-3p tattGGGTGAAaaat UUCACCCC m7a Created HPTK1_25007_G29909.1_31807424

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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