SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040437
Gene Symbol: C6orf48

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839655G>A COSM164507 PD4937a [breast][NS][carcinoma][HER-positive_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6715b-5p aaTGCCTGaaaatta ACAGGCAC m6b Disrupted HPRO8_12295_G16457.2_31807443
hsa-miR-30a-3p aatgcCTGAAAatta CUUUCAGU m6b Disrupted HPRO8_12295_G16457.2_31807443
hsa-miR-30d-3p aatgcCTGAAAatta CUUUCAGU m6b Disrupted HPRO8_12295_G16457.2_31807443
hsa-miR-30e-3p aatgcCTGAAAatta CUUUCAGU m6b Disrupted HPRO8_12295_G16457.2_31807443
hsa-miR-4692 aaTGCCTGAaaatta UCAGGCAG m7a (m7a->m6a) HPRO8_12295_G16457.2_31807443
hsa-miR-4742-5p aaTGCCTGAaaatta UCAGGCAA m7a (m7a->m6a) HPRO8_12295_G16457.2_31807443

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839645A>G COSM3347020 TCGA-HJ-7597-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3679-3p ttGGGGGAAaaatgc CUUCCCCC m7b (m7b->m6b) HPRO8_12294_G16457.1_31807424
hsa-miR-1250-3p ttgggggGAAAATGc ACAUUUUC m7b Created HPRO8_12294_G16457.1_31807424
hsa-miR-153-5p ttgggggAAAAATGc UCAUUUUU m7b Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-361-3p tTGGGGGAaaaatgc UCCCCCAG m7a Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-4446-5p ttggGGGAAAaatgc AUUUCCCU m6b Disrupted HPRO8_12294_G16457.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839644GA>G COSM279446 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4446-5p attggGGGAAAaatgc AUUUCCCU m6b Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-3679-3p attGGGGGAAaaatgc CUUCCCCC m7b Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-361-3p atTGGGGGAaaaatgc UCCCCCAG m7a (m7a->m6a) HPRO8_12294_G16457.1_31807424
hsa-miR-1250-3p attggggGAAAATGc ACAUUUUC m7b Created HPRO8_12294_G16457.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839643G>T COSM3624808 TCGA-D3-A2J8-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6802-3p tattGGGTGAAaaat UUCACCCC m7a Created HPRO8_12294_G16457.1_31807424
hsa-miR-361-3p tatTGGGGGAaaaat UCCCCCAG m7a Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-3679-3p tattGGGGGAAaaat CUUCCCCC m7b Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-4446-5p tattggGGGAAAaat AUUUCCCU m6b Disrupted HPRO8_12294_G16457.1_31807424
hsa-miR-500b-3p tatTGGGTGaaaaat GCACCCAG m6b Created HPRO8_12294_G16457.1_31807424
hsa-miR-5096 tattgGGTGAAAaat GUUUCACC m7b Created HPRO8_12294_G16457.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839605C>T COSM4471281 CSCC-49-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-381-3p aactttCTTGTATta UAUACAAG m7b Created HPRO8_12293_G16456.1_31807375
hsa-miR-300 aactttCTTGTATta UAUACAAG m7b Created HPRO8_12293_G16456.1_31807375
hsa-miR-4700-3p aacttTCCTGTatta CACAGGAC m6b Disrupted HPRO8_12293_G16456.1_31807375

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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