SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040437
Gene Symbol: C6orf48

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839605C>T COSM4471281 CSCC-49-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-381-3p aactttCTTGTATta UAUACAAG m7b Created HPCB3_19614_G26921.1_31807382
hsa-miR-4700-3p aacttTCCTGTatta CACAGGAC m6b Disrupted HPCB3_19614_G26921.1_31807382
hsa-miR-300 aactttCTTGTATta UAUACAAG m7b Created HPCB3_19614_G26921.1_31807382

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839590G>A COSM1246934 ESO-0129 [oesophagus][lower_third][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148b-5p atcctaAGAACTTac AAGUUCUG m7a Disrupted HPCB3_19614_G26921.1_31807382
hsa-miR-148a-5p atcctaAGAACTTac AAAGUUCU m7b Disrupted HPCB3_19614_G26921.1_31807382
hsa-miR-2116-5p atccTAAGAACttac GGUUCUUA m7b Disrupted HPCB3_19614_G26921.1_31807382
hsa-miR-5584-3p atcctAAGAACTtac UAGUUCUU m7b Disrupted HPCB3_19614_G26921.1_31807382
hsa-miR-651-5p ATCCTAAAaacttac UUUAGGAU m8a Created HPCB3_19614_G26921.1_31807382

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser