SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040428
Gene Symbol: SPATA7

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr14:g.88416826T>G COSM958435 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3609 agTCACTTTttaata CAAAGUGA m7b (m7b->m6b) HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-5190 aGTCACTGtttaata CCAGUGAC m7b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-548ah-5p agTCACTTTTtaata AAAAGUGA m8a Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-548az-5p agtCACTTTTtaata CAAAAGUG m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-548t-5p agtCACTTTTtaata CAAAAGUG m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256

Mutation Mutation ID Sample Name Cancer Type
chr14:g.88416804A>G COSM3793910 TCGA-BT-A3PK-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2681-5p gccaattGTAAAAat GUUUUACC m6b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-374a-5p gccaATTATAAaaat UUAUAAUA m7a Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-374b-5p gccaATTATAaaaat AUAUAAUA m6b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-7849-3p gcCAATTGTaaaaat GACAAUUG m7b (m6b->m7b) HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256

Mutation Mutation ID Sample Name Cancer Type
chr14:g.88416797G>A COSM1749011 B83 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-218-1-3p aatgcGAACCAatta AUGGUUCC m6b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-659-3p aatgcGAACCAAtta CUUGGUUC m7b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6814-3p aATGCGAGccaatta ACUCGCAU m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6872-5p aATGCGAGccaatta UCUCGCAU m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-8057 aatgcGAGCCAatta GUGGCUCU m6b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256

Mutation Mutation ID Sample Name Cancer Type
chr14:g.88416795G>T COSM1707673 YUWAND [skin][mucosal][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1179 gcAATGCTagccaat AAGCAUUC m6b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6069 gcaatgCTAGCCaat GGGCUAGG m6b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-621 gcaaTGCTAGCCaat GGCUAGCA m8a Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6814-3p gcaATGCGAGccaat ACUCGCAU m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6872-5p gcaATGCGAGccaat UCUCGCAU m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-8057 gcaatgcGAGCCAat GUGGCUCU m6b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256

Mutation Mutation ID Sample Name Cancer Type
chr14:g.88416795G>A COSM958434 TCGA-AP-A056-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-33a-5p gCAATGCAagccaat GUGCAUUG m7b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-33b-5p gCAATGCAagccaat GUGCAUUG m7b Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-4327 gcaaTGCAAGCCaat GGCUUGCA m8a Created HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6814-3p gcaATGCGAGccaat ACUCGCAU m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-6872-5p gcaATGCGAGccaat UCUCGCAU m7b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256
hsa-miR-8057 gcaatgcGAGCCAat GUGGCUCU m6b Disrupted HHKTB_2246_NM_018418|475|514|39.3664895865275|0.195186763058256

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser