SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040284
Gene Symbol: PAPD5

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.50225230C>T COSM1378166 TCGA-AA-3663-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4709-3p tcaaaCTCTTCAtca UUGAAGAG m7b Disrupted HPCB3_8425_G11596.1_50259126
hsa-miR-561-3p tcAAACTTTtcatca CAAAGUUU m7b (m6b->m7b) HPCB3_8425_G11596.1_50259126
hsa-miR-4709-3p tcaaaCTCTTCAtca UUGAAGAG m7b Disrupted HPCB3_8425_G11596.1_50259126
hsa-miR-561-3p tcAAACTTTtcatca CAAAGUUU m7b (m6b->m7b) HPCB3_8425_G11596.1_50259126

Mutation Mutation ID Sample Name Cancer Type
chr16:g.50225230C>G COSM435346 TCGA-C8-A12Z-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4709-3p tcaaaCTCTTCAtca UUGAAGAG m7b Disrupted HPCB3_8425_G11596.1_50259126
hsa-miR-4709-3p tcaaaCTCTTCAtca UUGAAGAG m7b Disrupted HPCB3_8425_G11596.1_50259126

Mutation Mutation ID Sample Name Cancer Type
chr16:g.50225229T>C COSM4186651 BK0027 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3179 ttcaaaCCCTTCatc AGAAGGGG m6b Created HPCB3_8425_G11596.1_50259126
hsa-miR-4709-3p ttcaaaCTCTTCAtc UUGAAGAG m7b Disrupted HPCB3_8425_G11596.1_50259126
hsa-miR-6864-5p ttcaaaCCCTTCAtc UUGAAGGG m7b Created HPCB3_8425_G11596.1_50259126
hsa-miR-7515 ttcaaaCCCTTCatc AGAAGGGA m6b Created HPCB3_8425_G11596.1_50259126
hsa-miR-3179 ttcaaaCCCTTCatc AGAAGGGG m6b Created HPCB3_8425_G11596.1_50259126
hsa-miR-4709-3p ttcaaaCTCTTCAtc UUGAAGAG m7b Disrupted HPCB3_8425_G11596.1_50259126
hsa-miR-6864-5p ttcaaaCCCTTCAtc UUGAAGGG m7b Created HPCB3_8425_G11596.1_50259126
hsa-miR-7515 ttcaaaCCCTTCatc AGAAGGGA m6b Created HPCB3_8425_G11596.1_50259126

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser