SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040153
Gene Symbol: SLAIN1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.77763178C>T COSM3814106 TCGA-AC-A2QI-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4639-5p cttcaCTTAGCActc UUGCUAAG m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-4663 cttcaCTCAGCactc AGCUGAGC m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-512-3p cttcactCAGCACTc AAGUGCUG m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-8077 cttcACTCAGCactc GGCUGAGU m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4639-5p cttcaCTTAGCActc UUGCUAAG m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-4663 cttcaCTCAGCactc AGCUGAGC m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-512-3p cttcactCAGCACTc AAGUGCUG m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-8077 cttcACTCAGCactc GGCUGAGU m7b Disrupted HPSEF_6419_G7678.1_78337314

Mutation Mutation ID Sample Name Cancer Type
chr13:g.77763177T>C COSM3814105 TCGA-AC-A2QI-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1262 tctTCACCCAgcact AUGGGUGA m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-4663 tcttcaCTCAGCact AGCUGAGC m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4701-3p tctTCACCCAgcact AUGGGUGA m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-5589-5p tcttcACCCAGCact GGCUGGGU m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-6736-5p tctTCACCCAGcact CUGGGUGA m8a Created HPSEF_6419_G7678.1_78337314
hsa-miR-6776-5p tcttCACCCAGcact UCUGGGUG m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-8077 tcttcACTCAGCact GGCUGAGU m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-1262 tctTCACCCAgcact AUGGGUGA m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-4663 tcttcaCTCAGCact AGCUGAGC m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4701-3p tctTCACCCAgcact AUGGGUGA m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-5589-5p tcttcACCCAGCact GGCUGGGU m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-6736-5p tctTCACCCAGcact CUGGGUGA m8a Created HPSEF_6419_G7678.1_78337314
hsa-miR-6776-5p tcttCACCCAGcact UCUGGGUG m7b Created HPSEF_6419_G7678.1_78337314
hsa-miR-8077 tcttcACTCAGCact GGCUGAGU m7b Disrupted HPSEF_6419_G7678.1_78337314

Mutation Mutation ID Sample Name Cancer Type
chr13:g.77763174C>T COSM3469817 TCGA-EE-A2A1-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3617-5p cTGTCTTTactcagc AAAGACAU m7a Created HPSEF_6419_G7678.1_78337314
hsa-miR-548u ctGTCTTTactcagc CAAAGACU m6b Created HPSEF_6419_G7678.1_78337314
hsa-miR-641 cTGTCTTTactcagc AAAGACAU m7a Created HPSEF_6419_G7678.1_78337314
hsa-miR-3617-5p cTGTCTTTactcagc AAAGACAU m7a Created HPSEF_6419_G7678.1_78337314
hsa-miR-548u ctGTCTTTactcagc CAAAGACU m6b Created HPSEF_6419_G7678.1_78337314
hsa-miR-641 cTGTCTTTactcagc AAAGACAU m7a Created HPSEF_6419_G7678.1_78337314

Mutation Mutation ID Sample Name Cancer Type
chr13:g.77763156C>A COSM948725 TCGA-HU-A4GU-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3612 cttcaGCCTCCaaag AGGAGGCA m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-3929 ctTCAGCCTCcaaag GAGGCUGA m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-432-3p cttcagCATCCAaag CUGGAUGG m6b Created HPSEF_6419_G7678.1_78337314
hsa-miR-4419b ctTCAGCCTCcaaag GAGGCUGA m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4443 cttcaGCCTCCAAag UUGGAGGC m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4478 ctTCAGCCTCcaaag GAGGCUGA m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4728-3p ctTCAGCATccaaag CAUGCUGA m7b (m6b->m7b) HPSEF_6419_G7678.1_78337314
hsa-miR-485-5p cttCAGCCTCcaaag AGAGGCUG m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-5004-3p cttcagcATCCAAag CUUGGAUU m6b Created HPSEF_6419_G7678.1_78337314
hsa-miR-650 cttcaGCCTCCaaag AGGAGGCA m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-6515-5p cttcagCCTCCAAag UUGGAGGG m7a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-6884-5p cttCAGCCTCcaaag AGAGGCUG m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-3612 cttcaGCCTCCaaag AGGAGGCA m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-3929 ctTCAGCCTCcaaag GAGGCUGA m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-432-3p cttcagCATCCAaag CUGGAUGG m6b Created HPSEF_6419_G7678.1_78337314
hsa-miR-4419b ctTCAGCCTCcaaag GAGGCUGA m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4443 cttcaGCCTCCAAag UUGGAGGC m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4478 ctTCAGCCTCcaaag GAGGCUGA m8a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-4728-3p ctTCAGCATccaaag CAUGCUGA m7b (m6b->m7b) HPSEF_6419_G7678.1_78337314
hsa-miR-485-5p cttCAGCCTCcaaag AGAGGCUG m7b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-5004-3p cttcagcATCCAAag CUUGGAUU m6b Created HPSEF_6419_G7678.1_78337314
hsa-miR-650 cttcaGCCTCCaaag AGGAGGCA m6b Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-6515-5p cttcagCCTCCAAag UUGGAGGG m7a Disrupted HPSEF_6419_G7678.1_78337314
hsa-miR-6884-5p cttCAGCCTCcaaag AGAGGCUG m7b Disrupted HPSEF_6419_G7678.1_78337314

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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