SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001039141
Gene Symbol: TRIOBP

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr22:g.37723381CCC>CTT COSM4518834 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4700-5p gtgaaaTCCCCAGAgcc UCUGGGGA m8a Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-4699-5p gtgaAATCTTCagagcc AGAAGAUU m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-4667-5p gtgaaaTCCCCAGagcc ACUGGGGA m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-4450 gtgaAATCCCCAgagcc UGGGGAUU m8a Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-3167 gtGAAATCCccagagcc AGGAUUUC m7b (m7b->m6b) HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-3150a-3p gtgaaaTCCCCAGagcc CUGGGGAG m7a Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-876-5p gtGAAATCCccagagcc UGGAUUUC m7b (m7b->m6b) HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-8089 gtgaaaTCCCCAGagcc CCUGGGGA m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-6857-5p gtgaaATCCCCAgagcc UUGGGGAU m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-6763-5p gtgaaaTCCCCAGagcc CUGGGGAG m7a Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-637 gtgaaatCCCCAGagcc ACUGGGGG m6b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637

Mutation Mutation ID Sample Name Cancer Type
chr22:g.37723377A>C COSM1308152 TCGA-GV-A3QH-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-92b-3p acacGTGCAATcccc UAUUGCAC m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-92a-3p acacGTGCAATcccc UAUUGCAC m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-876-5p acacgtGAAATCCcc UGGAUUUC m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-25-3p acacGTGCAATcccc CAUUGCAC m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-3167 acacgtGAAATCCcc AGGAUUUC m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-32-5p acacGTGCAATcccc UAUUGCAC m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-363-3p acacGTGCAATcccc AAUUGCAC m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-367-3p acacGTGCAATcccc AAUUGCAC m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637

Mutation Mutation ID Sample Name Cancer Type
chr22:g.37723348G>A COSM3554215 TCGA-D3-A51T-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130b-5p cccAAAGAGacactg ACUCUUUC m6b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-4753-3p cccAAAGAGAcactg UUCUCUUU m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-3657 cccaaaGGGACACtg UGUGUCCC m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-211-5p cccAAAGGGAcactg UUCCCUUU m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-204-5p cccAAAGGGAcactg UUCCCUUU m7b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-6832-3p cccAAAGGGacactg ACCCUUUU m6b Disrupted HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637
hsa-miR-6818-3p cccaaAGAGACActg UUGUCUCU m7b Created HHKTB_3194_NM_001039141|1058|1097|33.1507280728653|0.223883372063637

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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