SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001035260
Gene Symbol: VPS26A

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.69171266G>A COSM1348770 TCGA-DM-A1HA-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1279 ctgaAATATGAactg UCAUAUUG m7a Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-130a-5p ctgaAATGTGAActg UUCACAUU m8a Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-23a-3p ctgaAATGTGAactg AUCACAUU m7b Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-23b-3p ctgaAATGTGAactg AUCACAUU m7b Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-23c ctgaAATGTGAactg AUCACAUU m7b Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-5007-3p ctgaaATATGAactg AUCAUAUG m6b Created HHRBL_2011_BCBL1-2of3-SCL_11337

Mutation Mutation ID Sample Name Cancer Type
chr10:g.69171251C>T COSM2159832 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-761 catCTGCTGaacagc GCAGCAGG m6b Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-922 caTCTGCTGaacagc GCAGCAGA m7b (m6b->m7b) HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-214-3p catCTGCTGaacagc ACAGCAGG m6b Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-3619-5p catCTGCTGAacagc UCAGCAGG m7a Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-4291 catCTGCTGAAcagc UUCAGCAG m8a Created HHRBL_2011_BCBL1-2of3-SCL_11337

Mutation Mutation ID Sample Name Cancer Type
chr10:g.69171223T>G COSM1735254 ACINAR25 [pancreas][NS][carcinoma][acinar_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-3p cagcgATGTGAatct AUCACAUU m6b Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-23b-3p cagcgATGTGAatct AUCACAUU m6b Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-23c cagcgATGTGAatct AUCACAUU m6b Created HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-3671 cagcgATTTGAatct AUCAAAUA m6b Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-4762-5p cagcGATTTGaatct CCAAAUCU m6b Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337
hsa-miR-607 cagcgATTTGAAtct GUUCAAAU m7b Disrupted HHRBL_2011_BCBL1-2of3-SCL_11337

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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