SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001034845
Gene Symbol: GALNTL6
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.173021568C>T COSM3336695 LOVO [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4675 ACAGCCCCgttacac GGGGCUGU m8a Disrupted HPCB3_17163_G23570.1_173942721
hsa-miR-4508 acAGCCCCGttacac GCGGGGCU m7b (m7b->m6b) HPCB3_17163_G23570.1_173942721
hsa-miR-4446-3p aCAGCCCTGttacac CAGGGCUG m8a (m7a->m8a) HPCB3_17163_G23570.1_173942721
hsa-miR-185-3p aCAGCCCCgttacac AGGGGCUG m7b Disrupted HPCB3_17163_G23570.1_173942721
hsa-miR-194-5p acagccCTGTTACAc UGUAACAG m8a Created HPCB3_17163_G23570.1_173942721

Mutation Mutation ID Sample Name Cancer Type
chr4:g.173021559C>A COSM330455 90983 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][plasma_cell_myeloma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-147a tctCACACAacagcc GUGUGUGG m6b Disrupted HPCB3_17163_G23570.1_173942721
hsa-miR-2113 tctCACAAAacagcc AUUUGUGC m6b Created HPCB3_17163_G23570.1_173942721
hsa-miR-19b-2-5p tctcaCAAAACagcc AGUUUUGC m6b Created HPCB3_17163_G23570.1_173942721
hsa-miR-19b-1-5p tctcaCAAAACagcc AGUUUUGC m6b Created HPCB3_17163_G23570.1_173942721
hsa-miR-19a-5p tctcaCAAAACagcc AGUUUUGC m6b Created HPCB3_17163_G23570.1_173942721
hsa-miR-599 tctcACACAACagcc GUUGUGUC m7a Disrupted HPCB3_17163_G23570.1_173942721
hsa-miR-6818-5p tcTCACACAAcagcc UUGUGUGA m8a Disrupted HPCB3_17163_G23570.1_173942721
hsa-miR-758-3p tcTCACAAAacagcc UUUGUGAC m7a (m6a->m7a) HPCB3_17163_G23570.1_173942721

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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