SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033521
Gene Symbol: CSTF1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399332G>A COSM4675229 T2284 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-3p tatcAACAGGacgaa CCCUGUUC m6b Created HPTK1_18609_G22187.1_54974396
hsa-miR-1267 taTCAACAGGacgaa CCUGUUGA m8a Created HPTK1_18609_G22187.1_54974396
hsa-miR-4449 tatcaaCGGGACGaa CGUCCCGG m7a Disrupted HPTK1_18609_G22187.1_54974396

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399199C>G COSM4848348 TCGA-EK-A2RA-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-494-3p ggTGTTTCAaatcga UGAAACAU m7a (m7a->m6a) HPTK1_18608_G22186.1_54974263
hsa-miR-510-3p ggtGTTTCAAatcga AUUGAAAC m7b Disrupted HPTK1_18608_G22186.1_54974263
hsa-miR-607 ggtgTTTGAAatcga GUUCAAAU m6b Created HPTK1_18608_G22186.1_54974263
hsa-miR-6715b-3p ggtGTTTGAaatcga CUCAAACC m6b Created HPTK1_18608_G22186.1_54974263

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399134T>A COSM4099642 TCGA-F1-6874-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-2-3p attACAATTCTagtg AGAAUUGU m8a Disrupted HPTK1_18607_G22185.1_54974193
hsa-miR-219b-3p attaCAATTCTagtg AGAAUUGC m7a Disrupted HPTK1_18607_G22185.1_54974193
hsa-miR-28-3p attacaaATCTAGTg CACUAGAU m7b Created HPTK1_18607_G22185.1_54974193

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399024G>A COSM1412620 TCGA-AD-6964-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148b-5p acttgtCAGAACTca AAGUUCUG m7b Created HPTK1_18605_G22183.1_54974080
hsa-miR-3168 acttgtcAGAACTCa GAGUUCUA m7a Created HPTK1_18605_G22183.1_54974080
hsa-miR-3660 actTGTCAGaactca ACUGACAG m6b Created HPTK1_18605_G22183.1_54974080
hsa-miR-4256 acttGTCAGAactca AUCUGACC m6b Created HPTK1_18605_G22183.1_54974080
hsa-miR-4526 actTGTCAGaactca GCUGACAG m6b Created HPTK1_18605_G22183.1_54974080
hsa-miR-6719-3p actTGTCAGAactca UCUGACAU m7a Created HPTK1_18605_G22183.1_54974080
hsa-miR-6730-3p actTGTCAGaactca CCUGACAC m6b Created HPTK1_18605_G22183.1_54974080
hsa-miR-6874-3p acttgtCAGAACTca CAGUUCUG m7b Created HPTK1_18605_G22183.1_54974080
Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399023C>T COSM4581901 EWS834 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56397805C>T COSM3548025 TCGA-EE-A3AE-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5087 attattcCAAACCat GGGUUUGU m6b Disrupted HPTK1_18604_G22182.1_54972873
hsa-miR-6505-5p atTATTCCAAaccat UUGGAAUA m8a Disrupted HPTK1_18604_G22182.1_54972873

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56397695C>T COSM255927 SJMB038 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][medullomyoblastoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15b-3p agTGATTCGaactct CGAAUCAU m7a (m7a->m6a) HPTK1_18603_G22181.1_54972741
hsa-miR-3671 agtgATTTGAactct AUCAAAUA m6b Created HPTK1_18603_G22181.1_54972741
hsa-miR-4762-5p agtGATTTGaactct CCAAAUCU m6b Created HPTK1_18603_G22181.1_54972741
hsa-miR-607 agtgATTTGAACtct GUUCAAAU m8a Created HPTK1_18603_G22181.1_54972741

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56397689G>A COSM331222 LUAD-B00416 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15b-3p ccacccaATGATTCg CGAAUCAU m7b Created HPTK1_18603_G22181.1_54972741
hsa-miR-34b-3p ccacccAGTGATTcg CAAUCACU m7b Disrupted HPTK1_18603_G22181.1_54972741
hsa-miR-653-3p ccacCCAGTGAttcg UUCACUGG m7b Disrupted HPTK1_18603_G22181.1_54972741
hsa-miR-6776-5p cCACCCAGtgattcg UCUGGGUG m7b Disrupted HPTK1_18603_G22181.1_54972741

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56397662G>A COSM4675226 T3262 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-147a tgagaCCACACAaca GUGUGUGG m7b Created HPTK1_18603_G22181.1_54972741
hsa-miR-147b tgagaCCGCACAaca GUGUGCGG m7b Disrupted HPTK1_18603_G22181.1_54972741
hsa-miR-210-3p tgagacCGCACAaca CUGUGCGU m6b Disrupted HPTK1_18603_G22181.1_54972741
hsa-miR-3911 tgagaCCACACAaca UGUGUGGA m7a Created HPTK1_18603_G22181.1_54972741
hsa-miR-599 tgagaccACACAACa GUUGUGUC m7a Created HPTK1_18603_G22181.1_54972741
hsa-miR-644a tgagaCCACACaaca AGUGUGGC m6b Created HPTK1_18603_G22181.1_54972741
hsa-miR-6843-3p tGAGACCAcacaaca AUGGUCUC m7b Created HPTK1_18603_G22181.1_54972741
hsa-miR-6848-3p tGAGACCACacaaca GUGGUCUC m8a (m7a->m8a) HPTK1_18603_G22181.1_54972741

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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