SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033521
Gene Symbol: CSTF1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399285C>T COSM3548028 TCGA-EE-A181-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3123 atacATTCTCTcaag CAGAGAAU m7b Disrupted HPCB1_24644_G31208.1_54974338
hsa-miR-539-5p atacatTTTCTCaag GGAGAAAU m6b Created HPCB1_24644_G31208.1_54974338
Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399277A>G COSM3972624 TCGA-HT-7687-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399274C>T COSM3548027 TCGA-EE-A29H-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3606-3p aaAAATTTTaaatac AAAAUUUC m7a (m6a->m7a) HPCB1_24644_G31208.1_54974338
hsa-miR-4282 aaAAATTTTAaatac UAAAAUUU m8a Created HPCB1_24644_G31208.1_54974338

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399272T>A COSM2763941 CAL27 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-376a-5p ccaaaaAATCTAaat GUAGAUUC m6b Created HPCB1_24644_G31208.1_54974338
hsa-miR-4760-5p ccaaaaAATCTAAAt UUUAGAUU m8a Created HPCB1_24644_G31208.1_54974338
hsa-miR-8061 ccaaaaAATCTAAat CUUAGAUU m7b Created HPCB1_24644_G31208.1_54974338

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399265C>T COSM3548026 TCGA-EE-A2MS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3148 atTTTTTCCAaaaat UGGAAAAA m8a Disrupted HPCB1_24644_G31208.1_54974338
hsa-miR-3978 atttTTTCCAaaaat GUGGAAAG m6b Disrupted HPCB1_24644_G31208.1_54974338
hsa-miR-510-3p attttTTTCAAaaat AUUGAAAC m6b Created HPCB1_24644_G31208.1_54974338
hsa-miR-6124 attTTTTCCaaaaat GGGAAAAG m6b Disrupted HPCB1_24644_G31208.1_54974338
hsa-miR-7850-5p atttttTCCAAAaat GUUUGGAC m6b Disrupted HPCB1_24644_G31208.1_54974338
Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399073GT>G COSM1412621 TCGA-F4-6856-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56397805C>T COSM3548025 TCGA-EE-A3AE-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5087 attattcCAAACCat GGGUUUGU m6b Disrupted HPCB1_24642_G31206.1_54972872
hsa-miR-6505-5p atTATTCCAAaccat UUGGAAUA m8a Disrupted HPCB1_24642_G31206.1_54972872

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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