SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033521
Gene Symbol: CSTF1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399285C>T COSM3548028 TCGA-EE-A181-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3123 atacATTCTCTcaag CAGAGAAU m7b Disrupted HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-539-5p atacatTTTCTCaag GGAGAAAU m6b Created HHRBC_8128_BC3-2of3-SCL_4925
Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399277A>G COSM3972624 TCGA-HT-7687-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399274C>T COSM3548027 TCGA-EE-A29H-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3606-3p aaAAATTTTaaatac AAAAUUUC m7a (m6a->m7a) HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-4282 aaAAATTTTAaatac UAAAAUUU m8a Created HHRBC_8128_BC3-2of3-SCL_4925

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399272T>A COSM2763941 CAL27 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-376a-5p ccaaaaAATCTAaat GUAGAUUC m6b Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-4760-5p ccaaaaAATCTAAAt UUUAGAUU m8a Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-8061 ccaaaaAATCTAAat CUUAGAUU m7b Created HHRBC_8128_BC3-2of3-SCL_4925

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399265C>T COSM3548026 TCGA-EE-A2MS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3148 atTTTTTCCAaaaat UGGAAAAA m8a Disrupted HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-3978 atttTTTCCAaaaat GUGGAAAG m6b Disrupted HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-510-3p attttTTTCAAaaat AUUGAAAC m6b Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-6124 attTTTTCCaaaaat GGGAAAAG m6b Disrupted HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-7850-5p atttttTCCAAAaat GUUUGGAC m6b Disrupted HHRBC_8128_BC3-2of3-SCL_4925

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399254T>A COSM3991796 TCGA-B9-5155-01 [kidney][NS][carcinoma][papillary_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5197-5p tttgttcTGCCATTt CAAUGGCA m7b Disrupted HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-589-3p ttTGTTCTGccattt UCAGAACA m7b (m7b->m6b) HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-889-5p tttgttCAGCCATTt AAUGGCUG m8a Created HHRBC_8128_BC3-2of3-SCL_4925

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399236C>T COSM1483777 TCGA-E9-A1R5-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29a-3p cacatgaTGGTGCTg UAGCACCA m7b Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-29b-3p cacatgaTGGTGCTg UAGCACCA m7b Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-29c-3p cacatgaTGGTGCTg UAGCACCA m7b Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-767-5p cacatgATGGTGCtg UGCACCAU m7b Created HHRBC_8128_BC3-2of3-SCL_4925
hsa-miR-96-3p cACATGATggtgctg AAUCAUGU m7b Created HHRBC_8128_BC3-2of3-SCL_4925

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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