SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033053
Gene Symbol: NLRP1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.5559862C>T COSM3519867 TCGA-D9-A3Z1-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1257 aaaaATTCACacagc AGUGAAUG m6b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-183-3p aaaAATTCACacagc GUGAAUUA m7a Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-3606-3p aaAAATTTacacagc AAAAUUUC m6b Created HPSLC_8473_G10035.1_5463168
hsa-miR-6818-5p aaaaatTCACACAgc UUGUGUGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-1257 aaaaATTCACacagc AGUGAAUG m6b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-183-3p aaaAATTCACacagc GUGAAUUA m7a Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-3606-3p aaAAATTTacacagc AAAAUUUC m6b Created HPSLC_8473_G10035.1_5463168
hsa-miR-6818-5p aaaaatTCACACAgc UUGUGUGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-1257 aaaaATTCACacagc AGUGAAUG m6b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-183-3p aaaAATTCACacagc GUGAAUUA m7a Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-3606-3p aaAAATTTacacagc AAAAUUUC m6b Created HPSLC_8473_G10035.1_5463168
hsa-miR-6818-5p aaaaatTCACACAgc UUGUGUGA m7b Disrupted HPSLC_8473_G10035.1_5463168

Mutation Mutation ID Sample Name Cancer Type
chr17:g.5559857A>T COSM3820038 TCGA-D8-A1XQ-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-3p ttcacacTGCTGCTa AGCAGCAU m7a Created HPSLC_8473_G10035.1_5463168
hsa-miR-107 ttcacacTGCTGCTa AGCAGCAU m7a Created HPSLC_8473_G10035.1_5463168
hsa-miR-15a-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-15b-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-16-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-195-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-424-5p ttcacacTGCTGCTa CAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-4302 ttCACACTGctgcta CCAGUGUG m7b (m6b->m7b) HPSLC_8473_G10035.1_5463168
hsa-miR-4519 ttcaCACTGCTGcta CAGCAGUG m8a Created HPSLC_8473_G10035.1_5463168
hsa-miR-497-5p ttcacacTGCTGCTa CAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-646 ttcacacAGCTGCTa AAGCAGCU m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-6499-3p ttcACACTGCTgcta AGCAGUGU m8a Created HPSLC_8473_G10035.1_5463168
hsa-miR-6818-5p tTCACACAgctgcta UUGUGUGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-6838-5p ttcacacTGCTGCTa AAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-103a-3p ttcacacTGCTGCTa AGCAGCAU m7a Created HPSLC_8473_G10035.1_5463168
hsa-miR-107 ttcacacTGCTGCTa AGCAGCAU m7a Created HPSLC_8473_G10035.1_5463168
hsa-miR-15a-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-15b-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-16-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-195-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-424-5p ttcacacTGCTGCTa CAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-4302 ttCACACTGctgcta CCAGUGUG m7b (m6b->m7b) HPSLC_8473_G10035.1_5463168
hsa-miR-4519 ttcaCACTGCTGcta CAGCAGUG m8a Created HPSLC_8473_G10035.1_5463168
hsa-miR-497-5p ttcacacTGCTGCTa CAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-646 ttcacacAGCTGCTa AAGCAGCU m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-6499-3p ttcACACTGCTgcta AGCAGUGU m8a Created HPSLC_8473_G10035.1_5463168
hsa-miR-6818-5p tTCACACAgctgcta UUGUGUGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-6838-5p ttcacacTGCTGCTa AAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-103a-3p ttcacacTGCTGCTa AGCAGCAU m7a Created HPSLC_8473_G10035.1_5463168
hsa-miR-107 ttcacacTGCTGCTa AGCAGCAU m7a Created HPSLC_8473_G10035.1_5463168
hsa-miR-15a-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-15b-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-16-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-195-5p ttcacacTGCTGCTa UAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-424-5p ttcacacTGCTGCTa CAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-4302 ttCACACTGctgcta CCAGUGUG m7b (m6b->m7b) HPSLC_8473_G10035.1_5463168
hsa-miR-4519 ttcaCACTGCTGcta CAGCAGUG m8a Created HPSLC_8473_G10035.1_5463168
hsa-miR-497-5p ttcacacTGCTGCTa CAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-646 ttcacacAGCTGCTa AAGCAGCU m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-6499-3p ttcACACTGCTgcta AGCAGUGU m8a Created HPSLC_8473_G10035.1_5463168
hsa-miR-6818-5p tTCACACAgctgcta UUGUGUGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-6838-5p ttcacacTGCTGCTa AAGCAGCA m7b Created HPSLC_8473_G10035.1_5463168

Mutation Mutation ID Sample Name Cancer Type
chr17:g.5559846C>A COSM981620 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3674 gctactTCTACAAag AUUGUAGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-548ao-5p gcTACTTCTacaaag AGAAGUAA m7a (m7a->m6a) HPSLC_8473_G10035.1_5463168
hsa-miR-548ax gcTACTTCTacaaag AGAAGUAA m7a (m7a->m6a) HPSLC_8473_G10035.1_5463168
hsa-miR-568 gctacTTATACAaag AUGUAUAA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-3674 gctactTCTACAAag AUUGUAGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-548ao-5p gcTACTTCTacaaag AGAAGUAA m7a (m7a->m6a) HPSLC_8473_G10035.1_5463168
hsa-miR-548ax gcTACTTCTacaaag AGAAGUAA m7a (m7a->m6a) HPSLC_8473_G10035.1_5463168
hsa-miR-568 gctacTTATACAaag AUGUAUAA m7b Created HPSLC_8473_G10035.1_5463168
hsa-miR-3674 gctactTCTACAAag AUUGUAGA m7b Disrupted HPSLC_8473_G10035.1_5463168
hsa-miR-548ao-5p gcTACTTCTacaaag AGAAGUAA m7a (m7a->m6a) HPSLC_8473_G10035.1_5463168
hsa-miR-548ax gcTACTTCTacaaag AGAAGUAA m7a (m7a->m6a) HPSLC_8473_G10035.1_5463168
hsa-miR-568 gctacTTATACAaag AUGUAUAA m7b Created HPSLC_8473_G10035.1_5463168

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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